View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_69 (Length: 250)
Name: NF16943_low_69
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_69 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 30946156 - 30946393
Alignment:
| Q |
12 |
aaaggagataagcacaaagagaagaaaagctagatgagtttcttggaacaattgaaggtggcatctgccccaattattcaagtcctacttataagtgcag |
111 |
Q |
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| T |
30946156 |
aaaggagataagaacaaagagaagaaaagctagatgagttttctggaacaattgaaggtggcatctgccccaattattcaagtcctacttataagtgcag |
30946255 |
T |
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| Q |
112 |
ttggagcttatatggcaactgagcatggtaataatcttcttgcagcggactttcgaaaatcgttgaacaaggtaaaagtagcttaatgatttagatatca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30946256 |
ttggagcttatatggcaactgagcatggtaataatcttcttgcagcggactttcgaaaatcgttgaacaaggt-aaagtagcttaatgatttagatatca |
30946354 |
T |
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| Q |
212 |
gtgtttttcaattcaaatataagtttaataactatacac |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30946355 |
gtgtttttcaattcaaatataagtttaataactatacac |
30946393 |
T |
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