View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_71 (Length: 244)
Name: NF16943_low_71
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 20863436 - 20863214
Alignment:
| Q |
5 |
aattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgaccccgatgtgattatcaatcttgtagatcttcgt |
104 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||| | |
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| T |
20863436 |
aattatagttaatgcattcatatctcatgtaccacgaaagaacacagccatgaccagcgatggcgaccccgatgtgattatcaacctttaagatcttcat |
20863337 |
T |
|
| Q |
105 |
ctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaaaagct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20863336 |
ctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttattgctgctgaaccttgcttaaaagct |
20863237 |
T |
|
| Q |
205 |
tcgaattccgccttaagtgcttc |
227 |
Q |
| |
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||| ||| ||||||||||||||| |
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| T |
20863236 |
tcgtatttcgccttaagtgcttc |
20863214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 3400076 - 3399893
Alignment:
| Q |
5 |
aattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgaccccgatgtgattatcaatcttgtagatcttcgt |
104 |
Q |
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|||||||||||| ||||||| ||||||||| ||||||||||||| || ||| ||||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
3400076 |
aattatagttaacgcattcagatctcatgtaccgcgaaagaacacggccatgtccagcgatggcgaccccaatgtgatcatcaatcttgaagatcttcgt |
3399977 |
T |
|
| Q |
105 |
ctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctga |
188 |
Q |
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| T |
3399976 |
ctgatgataatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctga |
3399893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 3399087 - 3398983
Alignment:
| Q |
95 |
agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg |
194 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
3399087 |
agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg |
3398988 |
T |
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| Q |
195 |
cttaa |
199 |
Q |
| |
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||||| |
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| T |
3398987 |
cttaa |
3398983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 3399318 - 3399214
Alignment:
| Q |
95 |
agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg |
194 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
3399318 |
agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg |
3399219 |
T |
|
| Q |
195 |
cttaa |
199 |
Q |
| |
|
||||| |
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| T |
3399218 |
cttaa |
3399214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 3399549 - 3399445
Alignment:
| Q |
95 |
agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg |
194 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
3399549 |
agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg |
3399450 |
T |
|
| Q |
195 |
cttaa |
199 |
Q |
| |
|
||||| |
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| T |
3399449 |
cttaa |
3399445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 3399760 - 3399658
Alignment:
| Q |
97 |
atcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgct |
196 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
3399760 |
atcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttgct |
3399661 |
T |
|
| Q |
197 |
taa |
199 |
Q |
| |
|
||| |
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|
| T |
3399660 |
taa |
3399658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 3398856 - 3398777
Alignment:
| Q |
95 |
agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggaga |
174 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3398856 |
agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggaga |
3398777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 20863133 - 20863015
Alignment:
| Q |
110 |
gagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaaaagcttcgaa |
209 |
Q |
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||||| |||||| | | |||||||||||||||| |||| |||||||| ||||||||||||||||||| | ||||||||||| |||||| | ||||||| |
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| T |
20863133 |
gagaagataattggtatttggctttgttaacacgcgcgggaaccacgcgagttttggatcggagactcattgctgctgaacgttgcttgactgcttcgat |
20863034 |
T |
|
| Q |
210 |
ttccgccttaagtgcttca |
228 |
Q |
| |
|
||||||||||||||||||| |
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| T |
20863033 |
ttccgccttaagtgcttca |
20863015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 7133802 - 7134005
Alignment:
| Q |
5 |
aattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttat---------gaccagcgatggcgaccccgatgtgattatcaatcttgta |
95 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||| || || |||| |||||||| || |||||||||| ||||| ||| | |
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| T |
7133802 |
aattatagttaatgcattcagatctcatgtaccgggaaagaacacggccatcggcggtgagaccggcgatggcaacaccgatgtgatcatcaaccttaaa |
7133901 |
T |
|
| Q |
96 |
gatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgc |
195 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
7133902 |
gatcttcttctgatgagaagataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctgaaccttgc |
7134001 |
T |
|
| Q |
196 |
ttaa |
199 |
Q |
| |
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|||| |
|
|
| T |
7134002 |
ttaa |
7134005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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