View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_73 (Length: 240)
Name: NF16943_low_73
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 41574556 - 41574390
Alignment:
| Q |
14 |
caaaggacatagaggcaatagtagttataagcccgtggttctcagtcaaaaacagtaagaagagacacggtatcatactattggaacaacttaatttctg |
113 |
Q |
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| T |
41574556 |
caaaggacatagaggtaatagtagttataagcccgtggttctcagtcaaaaacagtaagaagagacacggtatcatactattggaacaacttaatttctg |
41574457 |
T |
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| Q |
114 |
tcggtggaatgaagattcaatttgcaagtgtactcttttagactttgttacaatataacactgtact |
180 |
Q |
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| T |
41574456 |
tcggtggaatgaagattcaatttgcaagtgtactcttttagactttgttacaatataacactgtact |
41574390 |
T |
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