View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_76 (Length: 233)
Name: NF16943_low_76
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 50465257 - 50465059
Alignment:
| Q |
19 |
tatatgaggtaaaaacaataaaaagaagttcttaataaatacagagcctagnnnnnnnagatctcaaaaccatccttttctaataaatagatacagtatg |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465257 |
tatatgaggtaaaaacaataaaaagaagttcctaataaatacagagcctagtttttttagatctcaaaaccatccttttctaataaatagatacagtatg |
50465158 |
T |
|
| Q |
119 |
cgtgatgcaaccgttccctctttaaaaacatcacaagaattcaccttcttttcttcggttcatataagctactactagcaaaattttcttagtctctct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465157 |
cgtgatgcaaccgttccctctttaaaaacatcacaagaattcaccttcttttcttcggttcatataagctactactagcaaaattttcttagtctctct |
50465059 |
T |
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