View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_77 (Length: 231)
Name: NF16943_low_77
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 40408880 - 40409081
Alignment:
| Q |
14 |
cataggcgcaaactcaacgataacctctagtacatgcagggagagacatgcgcaaaccctatgtctaagaggggacgtaatcgtaggggtggtttggaag |
113 |
Q |
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| T |
40408880 |
cataggcgcaaactcaacgataacctctagtacatgcagggagaggcatgcgcaaaccctatgtctaagaggggacgtaatcgtaggggtggtttggaag |
40408979 |
T |
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| Q |
114 |
ggacttcacaaacagtgcgtcccatgttttggacccttctcaagaccagtattatgtagttattaaggagatgctgctaaggagcactaccatgaccatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40408980 |
ggacttcacaaacagtgcgtcccatgttttggacccttctcaagaccagtattatgtagttattaaggagatgctgctaaggagcactaccatgaccatt |
40409079 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
40409080 |
ct |
40409081 |
T |
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