View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_79 (Length: 220)

Name: NF16943_low_79
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_79
NF16943_low_79
[»] chr7 (5 HSPs)
chr7 (16-146)||(38128131-38128261)
chr7 (147-202)||(9416725-9416780)
chr7 (141-184)||(35543184-35543227)
chr7 (141-184)||(38130000-38130043)
chr7 (144-202)||(40034396-40034454)
[»] chr5 (4 HSPs)
chr5 (141-206)||(6531233-6531298)
chr5 (141-206)||(9833277-9833342)
chr5 (141-206)||(9833814-9833879)
chr5 (141-169)||(6532987-6533015)
[»] chr3 (2 HSPs)
chr3 (141-202)||(25707228-25707289)
chr3 (141-171)||(20406494-20406524)
[»] chr6 (1 HSPs)
chr6 (141-184)||(21540522-21540565)
[»] chr4 (1 HSPs)
chr4 (147-202)||(23187673-23187728)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 38128131 - 38128261
Alignment:
Q  16 agaagttctttaaatatatatctaacataatttcgcacttatagtttttgtcaattttagctcacatttagacaatctttcacaagatatatttactagt 115  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38128131 agaaattctttaaatatatgtctaacataatttcacacttatagtttttgtcaattttagctcacatttagacaatctttcacaagatatatttactagt 38128230  T
Q  116 tattttttatgggtttttctacaactttttc 146  Q
    |||||||||||| ||||||||||||||||||    
T  38128231 tattttttatggatttttctacaactttttc 38128261  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9416725 - 9416780
Alignment:
Q  147 aacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatc 202  Q
    |||||||||||||||||||||||||  ||||||||||| || |||||||| |||||    
T  9416725 aacaaaaactatcatattaattatccttttcttgaaaaatgataattttcactatc 9416780  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 35543227 - 35543184
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaa 184  Q
    |||||||||||||| ||||||||||||||||  |||||||||||    
T  35543227 tttttcaacaaaaattatcatattaattatccttttcttgaaaa 35543184  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 38130043 - 38130000
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaa 184  Q
    |||||||||||| ||||||||||||||||| | |||||||||||    
T  38130043 tttttcaacaaagactatcatattaattattattttcttgaaaa 38130000  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 40034454 - 40034396
Alignment:
Q  144 ttcaacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatc 202  Q
    ||||||| |||| |||||||||||||||  ||||||||||| |  ||||||||||||||    
T  40034454 ttcaacataaacaatcatattaattatccttttcttgaaaaataataattttctctatc 40034396  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 6531233 - 6531298
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatcatat 206  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  6531233 tttttcaacaaaaactatcatattaattatcatttttttgaaaaatggtaattttctctatcatat 6531298  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 9833277 - 9833342
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatcatat 206  Q
    ||||||||||||||||||||||||||||| |  ||||||||||| || ||||||||||||||||||    
T  9833277 tttttcaacaaaaactatcatattaattagctttttcttgaaaaatgataattttctctatcatat 9833342  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 9833879 - 9833814
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatcatat 206  Q
    |||||||||||||| ||||||||||||||||  |||||| |||| |  || |||||||||||||||    
T  9833879 tttttcaacaaaaattatcatattaattatccttttcttaaaaaattatagttttctctatcatat 9833814  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 6533015 - 6532987
Alignment:
Q  141 tttttcaacaaaaactatcatattaatta 169  Q
    |||||||||||||||||||||||||||||    
T  6533015 tttttcaacaaaaactatcatattaatta 6532987  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 25707289 - 25707228
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatc 202  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||    
T  25707289 ttttttaacaaaaactattatattaattatcattttcttgaaaaatggtaattctctctatc 25707228  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 20406524 - 20406494
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatc 171  Q
    |||||||||||||||||||||||||||||||    
T  20406524 tttttcaacaaaaactatcatattaattatc 20406494  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 21540565 - 21540522
Alignment:
Q  141 tttttcaacaaaaactatcatattaattatcactttcttgaaaa 184  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  21540565 tttttcaacaaaaactatcaaattaattatcattttcttgaaaa 21540522  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 23187728 - 23187673
Alignment:
Q  147 aacaaaaactatcatattaattatcactttcttgaaaagtggtaattttctctatc 202  Q
    ||||||||| |||||||||||||||  ||||||||||| || ||||||||||||||    
T  23187728 aacaaaaacaatcatattaattatccttttcttgaaaaatgataattttctctatc 23187673  T

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