View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_8 (Length: 668)
Name: NF16943_low_8
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 227 - 651
Target Start/End: Complemental strand, 40999524 - 40999100
Alignment:
| Q |
227 |
attgaatcacattgtaaaatgcagggactaattaactcagcaaaaagagacaattttaacattccagtttatgcaccaagtatgcaagacttcaaggagg |
326 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999524 |
attgaatcacattgtaaaatgcagggactaattagctctacaaaaagagacaattttaacattccagtttatgcaccaagtatgcaagacttcaaggagg |
40999425 |
T |
|
| Q |
327 |
tagttgaagcaaatggttcatttgtcataaacaaacttgaggtattcaaaggaggaagtccccttgttttgaacaaaccagatgatgctaatgaagtagg |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999424 |
tagttgaagcaaatggttcatttgtcataaacaaacttgaggtattcaaaggaggaagtccccttgttttgaacaaaccagatgatgctaatgaagtagg |
40999325 |
T |
|
| Q |
427 |
taaggctctagccaacagctgcaggactgtgtgtggagtccttgttgatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgc |
526 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999324 |
tagggctctagccaacagctgcaggactgtgtgtggagtccttgttgatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgc |
40999225 |
T |
|
| Q |
527 |
cgagccactaatcgtgccaaagagcttctagagaaactacagttctttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatc |
626 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999224 |
cgagccactaatcgtgccaaagagcttctagagaaactacagttctttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatc |
40999125 |
T |
|
| Q |
627 |
gttcattgatttctaataccatatg |
651 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40999124 |
gttcattgatttctaataccatatg |
40999100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 40999714 - 40999518
Alignment:
| Q |
1 |
agcatttccccaatataataataagttggaactaatttttatt---gcattaaaagtgaaaaccttgattagtgtatatgcaattgagtagtatgagcag |
97 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40999714 |
agcatttctccaatataataataagttggaactaatttttatttatgcattaaaagtgaaaaccttgattagtgtatatgcaattgagtagtatgagcag |
40999615 |
T |
|
| Q |
98 |
taatgtgtttgcaacttgtgtttagaatgatgatcaatagcttacttcaagattttccaactattagagcatatagtatcctttttcatcattgaat |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999614 |
taatgtgtttgcaacttgtgtttagaatgatgatcaatagcttccttcaagattttccaactattagagcatatagtatcctttttcatcattgaat |
40999518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 227 - 651
Target Start/End: Complemental strand, 20851886 - 20851462
Alignment:
| Q |
227 |
attgaatcacattgtaaaatgcagggactaattaactcagcaaaaagagacaattttaacattccagtttatgcaccaagtatgcaagacttcaaggagg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851886 |
attgaatcacattgtaaaatgcagggactaattagctctacaaaaagagacaattttaacattccagtttatgcaccaagtatgcaagacttcaaggagg |
20851787 |
T |
|
| Q |
327 |
tagttgaagcaaatggttcatttgtcataaacaaacttgaggtattcaaaggaggaagtccccttgttttgaacaaaccagatgatgctaatgaagtagg |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20851786 |
tagttgaagcaaatggttcatttgtcataaacaaacttgaggtattcaaaggaggaagtccccttgttttgaacaaaccagatgatgctaatgaagtagg |
20851687 |
T |
|
| Q |
427 |
taaggctctagccaacagctgcaggactgtgtgtggagtccttgttgatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgc |
526 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851686 |
tagggctctagccaacagctgcaggactgtgtgtggagtccttgttgatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgc |
20851587 |
T |
|
| Q |
527 |
cgagccactaatcgtgccaaagagcttctagagaaactacagttctttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatc |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851586 |
cgagccactaatcgtgccaaagagcttctagagaaactacagtgctttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatc |
20851487 |
T |
|
| Q |
627 |
gttcattgatttctaataccatatg |
651 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
20851486 |
gttcattgatttctaataccatatg |
20851462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20852067 - 20851880
Alignment:
| Q |
1 |
agcatttccccaatataataataagttggaactaatttttattgcattaaaagtgaaaaccttgattagtgtatatgcaattgagtagtatgagcagtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
20852067 |
agcatttccccaatataataataagttggaactaatttttattt------aagtgaaaaccttgattagtgtatatgcaattgagtagtaggagcagtaa |
20851974 |
T |
|
| Q |
101 |
tgtgtttgcaacttgtgtttagaatgatgatcaatagcttacttcaagattttccaactattagagcatatagtatcctttttcatcattgaat |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20851973 |
tgtgtttgcaacttgtgtttagaatgatgatgaatagcttccttcaagattttccaactattagagcatatagtatcctttttcatcattgaat |
20851880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 269 - 523
Target Start/End: Complemental strand, 21554940 - 21554686
Alignment:
| Q |
269 |
aaaagagacaattttaacattccagtttatgcaccaagtatgcaagacttcaaggaggtagttgaagcaaatggttcatttgtcataaacaaacttgagg |
368 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||| | |
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|
| T |
21554940 |
aaaagagacagtttcaacattccaatttatgcaccaaccctccaagacttcaaagaggtagttgaagctgatggttcattttccataaacaagcttgaag |
21554841 |
T |
|
| Q |
369 |
tattcaaaggaggaagtccccttgttttgaacaaaccagatgatgctaatgaagtaggtaaggctctagccaacagctgcaggactgtgtgtggagtcct |
468 |
Q |
| |
|
| | ||||||||||| || || ||| | ||| ||||||||||||| | ||||||||| | | ||||||||| ||||| |||| ||| | |||||| || |
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|
| T |
21554840 |
ttgttaaaggaggaagccctctagttgttaaccaaccagatgatgcaagtgaagtaggaagagttctagccaatagctgtaggagtgtttctggagttct |
21554741 |
T |
|
| Q |
469 |
tgttgatgctcacattggtgataaccttagtgaggagctcttccttagagtggag |
523 |
Q |
| |
|
|||||||||||| |||||||| || || ||||| || || ||||||||||||||| |
|
|
| T |
21554740 |
tgttgatgctcatattggtgacaagctaagtgaagaacttttccttagagtggag |
21554686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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