View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_81 (Length: 214)
Name: NF16943_low_81
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 8418573 - 8418755
Alignment:
| Q |
15 |
aatatgtcctaaattccacataatttgctatgaaaacactcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacgtgatgattcagaacc |
114 |
Q |
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| T |
8418573 |
aatatgtcctaaattccacataatttgctatgaaaacactcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacttgatgattcagaacc |
8418672 |
T |
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| Q |
115 |
aggaactagatcatgtacatgccatgccagtgcaacagaattgcgtcgtaaatcaatgggcactcttcaaagaaataagtatg |
197 |
Q |
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| T |
8418673 |
aggaactagatcatgtacatgccatgccagtgcaacagaattgcgtcgtaaatcaatggacactcttcaaagaaataagtatg |
8418755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 8480253 - 8480179
Alignment:
| Q |
39 |
ttgctatgaaaaca-ctcctctgatgaaaatcaatccttgtgatgaaaaaatgacgaaaacgtgatgattcagaac |
113 |
Q |
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| T |
8480253 |
ttgctatgaaaacaactactctgatgaaaacgaatccttgtgatgaaaaaa-gatgaaaacgtgataatgcagaac |
8480179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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