View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16944_high_1 (Length: 939)
Name: NF16944_high_1
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Complemental strand, 26417969 - 26417451
Alignment:
| Q |
16 |
gagacaaaggtttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417969 |
gagacaaaggtttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaat |
26417870 |
T |
|
| Q |
116 |
gtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttatggtttggttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26417869 |
gtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttgtggtttggttt |
26417770 |
T |
|
| Q |
216 |
ttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgacgatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26417769 |
ttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgaagatg |
26417670 |
T |
|
| Q |
316 |
agtgtctgatgtagagaatgggttttcttcctaatagtgcagtgattaaaatttggcagggtcccgagtctctttagtgatgcatgtagctcaacccctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26417669 |
agtgtctgatgtagagaatgggttttcttcctaatagtccagtgattaaaatttggcagggtcccgagtccctttagtgatgcatgtacctcaacccctg |
26417570 |
T |
|
| Q |
416 |
cttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagattacgctacacttctcacaagtgtactataatatgtaatgcatatgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417569 |
cttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagattacgctacacttctcacaagtgtactataatatgtaatgcatatgt |
26417470 |
T |
|
| Q |
516 |
ataacgttcactatttgct |
534 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
26417469 |
ataacattcactatttgct |
26417451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 553 - 926
Target Start/End: Complemental strand, 26417465 - 26417092
Alignment:
| Q |
553 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26417465 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcaataatattacatggtagacgtaagga |
26417366 |
T |
|
| Q |
653 |
ttttaaataagttctaacctacaaagnnnnnnngttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
752 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417365 |
ttttaaataagttctaacctacaaagtttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
26417266 |
T |
|
| Q |
753 |
gtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
852 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417265 |
gtgctatcttcatgtccaataagagtactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
26417166 |
T |
|
| Q |
853 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatg |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26417165 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggttttttaagcgataacagatg |
26417092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 553 - 926
Target Start/End: Original strand, 27983503 - 27983877
Alignment:
| Q |
553 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
652 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
27983503 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
27983602 |
T |
|
| Q |
653 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
751 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27983603 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
27983702 |
T |
|
| Q |
752 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
851 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
27983703 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
27983802 |
T |
|
| Q |
852 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatg |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27983803 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatg |
27983877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 553 - 926
Target Start/End: Original strand, 28070033 - 28070407
Alignment:
| Q |
553 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
652 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
28070033 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
28070132 |
T |
|
| Q |
653 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
751 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
28070133 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
28070232 |
T |
|
| Q |
752 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
851 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
28070233 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
28070332 |
T |
|
| Q |
852 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatg |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28070333 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatg |
28070407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 77 - 534
Target Start/End: Original strand, 27983070 - 27983517
Alignment:
| Q |
77 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
176 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
27983070 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
27983169 |
T |
|
| Q |
177 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
276 |
Q |
| |
|
| || |||||||||||||||||||||| ||||||||||| | ||| | || ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
27983170 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatggtggaggt---------------ctaaggttggtttgctgtgat |
27983254 |
T |
|
| Q |
277 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttcttcctaatagtgcagtgattaaaatttggcaggg |
376 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| |
|
|
| T |
27983255 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttcttcctagtagtgcagcgatcaaaatctggcaggg |
27983354 |
T |
|
| Q |
377 |
tcccgagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtt-----tggagtatagatta |
471 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || || |||||||| || ||||| ||||| |
|
|
| T |
27983355 |
tcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagttagttttgaagtatggatta |
27983454 |
T |
|
| Q |
472 |
cgctacacttctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
534 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
27983455 |
cactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgct |
27983517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 77 - 534
Target Start/End: Original strand, 28069600 - 28070047
Alignment:
| Q |
77 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
176 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
28069600 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
28069699 |
T |
|
| Q |
177 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
276 |
Q |
| |
|
| || |||||||||||||||||||||| ||||||||||| | ||| | || ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
28069700 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatggtggaggt---------------ctaaggttggtttgctgtgat |
28069784 |
T |
|
| Q |
277 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttcttcctaatagtgcagtgattaaaatttggcaggg |
376 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| |
|
|
| T |
28069785 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttcttcctagtagtgcagcgatcaaaatctggcaggg |
28069884 |
T |
|
| Q |
377 |
tcccgagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtt-----tggagtatagatta |
471 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || || |||||||| || ||||| ||||| |
|
|
| T |
28069885 |
tcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagttagttttgaagtatggatta |
28069984 |
T |
|
| Q |
472 |
cgctacacttctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
534 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28069985 |
cactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgct |
28070047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 381 - 532
Target Start/End: Original strand, 27981992 - 27982143
Alignment:
| Q |
381 |
gagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagattacgctacact |
480 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||| |||| ||||| |||||||| | || |||||||||| ||||||||| || ||| ||| |
|
|
| T |
27981992 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtagtttgaagtatagatcacactatact |
27982091 |
T |
|
| Q |
481 |
tctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttg |
532 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
27982092 |
cctcataagtgtattataatatgaaatgcatatgtataacatccactatttg |
27982143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 381 - 532
Target Start/End: Original strand, 28068522 - 28068673
Alignment:
| Q |
381 |
gagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagattacgctacact |
480 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||| |||| ||||| |||||||| | || |||||||||| ||||||||| || ||| ||| |
|
|
| T |
28068522 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtagtttgaagtatagatcacactatact |
28068621 |
T |
|
| Q |
481 |
tctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttg |
532 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
28068622 |
cctcataagtgtattataatatgaaatgcatatgtataacatccactatttg |
28068673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27982991 - 27983047
Alignment:
| Q |
24 |
ggtttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
80 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27982991 |
ggtttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
27983047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 28069521 - 28069577
Alignment:
| Q |
24 |
ggtttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
80 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28069521 |
ggtttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
28069577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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