View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_high_13 (Length: 246)
Name: NF16944_high_13
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 51769757 - 51769983
Alignment:
| Q |
1 |
acaaactgcatatgtttaactgtggtagattgctacaagaagacacattatagttaagaaaattgaaaatgaaaggaaaagaactttaggaattaggagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51769757 |
acaaactgcatatgtttaactgtggtagattgctacaagaagacacattatagttaagaaaattgaaaatgaaaggaaaagaactttaggaattaggagt |
51769856 |
T |
|
| Q |
101 |
acacaagaactaaaaattgaaaaccgtaagtaattagctataggaaatttcaccctatctccaataatccaggaagaccgacccttgtttgataatagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51769857 |
acacaagaactaaaaattgaaaaccgtaagtaattagctataggaaatttcaccctatctccaataatccaggaagaccgatccttgtttgataatagat |
51769956 |
T |
|
| Q |
201 |
gttcaaaatgtcaatttctatgggtga |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
51769957 |
gttcaaaatgtcaatttctatgggtga |
51769983 |
T |
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