View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_high_6 (Length: 426)
Name: NF16944_high_6
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 17138933 - 17139335
Alignment:
| Q |
18 |
gattaaagacaaaatctcaagtgataaacataattccattggcttttacatatcgagccctcaaaatcaccatcaccatcaatggtggatcatggatgcc |
117 |
Q |
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| T |
17138933 |
gattaaagacaaaatctcaagtgataaacataattccattggcttttacatatcgagccctcaaaatcaccatcaccatcaatggtggatcatggatgcc |
17139032 |
T |
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| Q |
118 |
aatcaatccagggattgtatatcactttcttcaaggctcacttccttttgttttttgtgtgagttgaaagaaaggaaaagttcattagtgcatcttaagc |
217 |
Q |
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| T |
17139033 |
aatcaatccagggattgtatatcactttcttcaaagctcacttccttttgttttttgtgtgagttgaaagaaaggaaaagttcattagtgcatcttaagc |
17139132 |
T |
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| Q |
218 |
ttagctttatataaaattggcagctattaccaccttttgcaccactcaataagtaaatagaagaaaagaagtgatttggggtcatttcattatcatttat |
317 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17139133 |
ttagctttatat-aaattggcagctattaccaccttttgcaccactcaacaagtaaatagaagaaaagaagtgatttggggtcatttcattatcatttat |
17139231 |
T |
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| Q |
318 |
cattttaaatatagtagtcttagatgataaattattgtattaagatactaatcaatataaaatctcttatcttgttatgtctttaatcatactattcttc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17139232 |
cattttaaatatagtagtcttagatgataaattattgtattaagatactaatcaatataaaatctcttatcttgttatgtctttaatcatactattcttt |
17139331 |
T |
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| Q |
418 |
tcac |
421 |
Q |
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| T |
17139332 |
tcac |
17139335 |
T |
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