View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_high_8 (Length: 359)
Name: NF16944_high_8
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_high_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 44950051 - 44950426
Alignment:
| Q |
1 |
acaatgtagacaaaatgatcactattttaagacatcaatgactgactatgacaactccaaacacgtaatgatcattattttaagcgataaagtgactata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950051 |
acaatgtagacaaaatgatcattattttaagacatcaatgaccgaatatgacaactccaaacacgtaatgatcattattttaagcgataaagtgactata |
44950150 |
T |
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| Q |
101 |
aacctttgagtccatcttcgttgataatgca---------------------gatggattcctcatacttaccaatctgttgatctaggtcaccaacata |
179 |
Q |
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| T |
44950151 |
aacctttgagtccatcttcgttgataatgcagatggattcgttgatcttgcagatggattcctaatacttaccaatctgttgatctaggtcaccaacata |
44950250 |
T |
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| Q |
180 |
tacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaatacagcacatgtaaag |
279 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950251 |
tacttgattgatcttgtttagcacatccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaatacagcacatgtaaag |
44950350 |
T |
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| Q |
280 |
atctcaaattttacaatatgttcaaaattttattaggttcacttcataattcgttgatcttgcagatggattcctat |
356 |
Q |
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| T |
44950351 |
atctcaaattttacaatatgttcaaaa-tttattaggttcacttcataattcgttgatcttgcagatggattcctat |
44950426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44944134 - 44944199
Alignment:
| Q |
1 |
acaatgtagacaaaatgatcactattttaagacatc--aatgactgactatgacaactccaaacac |
64 |
Q |
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| T |
44944134 |
acaatgtagacaaaatgatcattattttaaggcatccatatgactgtctatgacaactccaaacac |
44944199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 6470899 - 6470960
Alignment:
| Q |
4 |
atgtagacaaaatgatcact-attttaagacatcaatgactgactatgacaactccaaacac |
64 |
Q |
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| T |
6470899 |
atgtacacaaaatgatcaattattttaacacatctatgattgactatgacaactccaaacac |
6470960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 16464269 - 16464426
Alignment:
| Q |
138 |
ttcctcatacttaccaatctgttgatctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattct |
237 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| |||||||||||| |
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| T |
16464269 |
ttcctcatacttaccaatctgttgatctaggtctccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattct |
16464368 |
T |
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| Q |
238 |
gttctgtacacaaacattaagaaaaatacagcacatgtaaagatctcaaattttacaa |
295 |
Q |
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| T |
16464369 |
gttctgtacacaaacatcaagaaaaatacagcacatgtaaagatctcaaatttcacaa |
16464426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 16471291 - 16471448
Alignment:
| Q |
138 |
ttcctcatacttaccaatctgttgatctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattct |
237 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||| ||||||||||||||| |||||||||||| |
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| T |
16471291 |
ttcctcatacttaccaatctgttgatctaggtctccaacatatactccattgatcttgtttaatacatccacagcaatttcctcaaccaatgccaattct |
16471390 |
T |
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| Q |
238 |
gttctgtacacaaacattaagaaaaatacagcacatgtaaagatctcaaattttacaa |
295 |
Q |
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| T |
16471391 |
gttctgtacacaaacatcaagcataatacaacacatgtaaagatctcaaatttcacaa |
16471448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 16493763 - 16493889
Alignment:
| Q |
138 |
ttcctcatacttaccaatctgttgatctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattct |
237 |
Q |
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||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||| ||| |||| |
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| T |
16493763 |
ttcctcatacttagcaatttggtgatctaggtcaccaacatatactcgattgatcttgtttagaacgtccatagcgatttcctcaactaattccagttct |
16493862 |
T |
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| Q |
238 |
gttctgtacacaaacattaagaaaaat |
264 |
Q |
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| T |
16493863 |
gtcctgttctcaaacattgacaaaaat |
16493889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 418805 - 418764
Alignment:
| Q |
23 |
tattttaagacatcaatgactgactatgacaactccaaacac |
64 |
Q |
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| T |
418805 |
tattttaagacatctatgattgactatgacaactccaaacac |
418764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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