View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_high_9 (Length: 337)
Name: NF16944_high_9
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 56007 - 55694
Alignment:
| Q |
1 |
ccaaattaattgatttgagtcttcacatccttttagcttactctcaccaattgcacgaccatcctaaagaattaattaattaagacaaacatgcatgaaa |
100 |
Q |
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| T |
56007 |
ccaaattaattgatttgagtcttcacatccttttagcttactctcaccaattgcacgaccatcctaaagaattaattaattaagacaaacatgcatggaa |
55908 |
T |
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| Q |
101 |
ttggaattcgacacatacaaatatacaatcaatataattcacctgagttcgagcaccnnnnnnnatattaaaagagtatgatctgagtttttgggtgtca |
200 |
Q |
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| T |
55907 |
ttggaattcgacacatacaaatatacaatcaatataattcacctgagttcgagcacccggggggatattaaaagagtatgatctgagtttttgggtgtca |
55808 |
T |
|
| Q |
201 |
tgatcatgatcgtcctccaaaatttctttagctttctgtgcgaggactccccagaaacccgacttggaagcatccccgtaagaatcaaagctctacatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55807 |
tgatcatgatcgtcctccaaaatttctttagctttctgtgcgaggactccccagaaacccgacttggaagcatccccgtaagaatcaaagctctgcatga |
55708 |
T |
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| Q |
301 |
atgcgatggtatgt |
314 |
Q |
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|||||||||||||| |
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| T |
55707 |
atgcgatggtatgt |
55694 |
T |
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