View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_10 (Length: 353)
Name: NF16944_low_10
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 3018157 - 3017867
Alignment:
| Q |
1 |
tagaatattatctagatgaattgcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatctataaaca----tacatatatgaagt |
96 |
Q |
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| T |
3018157 |
tagaatattatctagatgaattgcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatctataaacaaacatacatatatgaagt |
3018058 |
T |
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| Q |
97 |
ttggtcttaactagaaaatatttttaaagataaacaactaatttggcacaaaaaattcttaaccaaaagcaccgaagtttcccacatgattgatgcatca |
196 |
Q |
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| T |
3018057 |
ttggtcttaactagaaaatatttttaaagataaacaactaatttggcacaaaaaattcttaaccaaaagcaccgaaatttcccacatgattgatgcatca |
3017958 |
T |
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| Q |
197 |
tttgcaccaaagttcactgcatgattattgagtcaagaacatcaaccatagtacccaacatattcacagcatgccgcaaataggtattata |
287 |
Q |
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| T |
3017957 |
tttgcaccaaagttcactgcatgattattgagtcaagaacatcaaccatagtacccaacatattcacagcatgccgcaaataggtattata |
3017867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 3021251 - 3020968
Alignment:
| Q |
23 |
gcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatc--tataaacatacatatatgaagtttggtcttaac-------tagaaa |
113 |
Q |
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||||||| |||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||| || |
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| T |
3021251 |
gcatatgcaacttaccttttagaatagtcaagaaaagacttttggcaatatctgtataaacataca-atatgaagtttggtcttaactcttaagtagtaa |
3021153 |
T |
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| Q |
114 |
atatttttaaagat-aaacaactaatttggcacaaaaaattcttaaccaaaagcaccgaagtttcccacatgattg---atgcatcat-ttgcaccaaag |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||| | | ||| ||||||||||| |
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| T |
3021152 |
atatttttaaagataaaacaactaatttggcacaaaaaattcttagcc---agcactgaagttcaccacatgattgctattagaacatattgcaccaaag |
3021056 |
T |
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| Q |
209 |
ttcactgcatgattattgagtcaagaac---------atcaaccatagtacccaacatattcacagcatgccgcaaataggtattata |
287 |
Q |
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|| | |||||| | |||| ||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
3021055 |
tttgccacatgatcactgaggcaagaacatgattataatcaaccatagtacccaacatattcacaacataccgcaaacaggtattata |
3020968 |
T |
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