View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_12 (Length: 335)
Name: NF16944_low_12
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 1172630 - 1172899
Alignment:
| Q |
34 |
aaaaactagtccaattaatgacaacctattacacaatggattagcaaatcaacttgatattaaaattaatattaggaattgaacatgttgaaacatcaat |
133 |
Q |
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| T |
1172630 |
aaaaactggtccaattaatgacaacctattacacaatggattagcaaatcaacttgatattaaaattaatattaagaatcgaaca---------aacaaa |
1172720 |
T |
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| Q |
134 |
cataaataaggcattctgacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctgaaattaatattaaga |
233 |
Q |
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| T |
1172721 |
ca---ataa---attc-gacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctgaaattaatattaaga |
1172813 |
T |
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| Q |
234 |
gtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattctgaataacaagcaaacgacgattataactctcaat |
319 |
Q |
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| T |
1172814 |
gtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagcaaacgacgattataactctcaat |
1172899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 1182388 - 1182431
Alignment:
| Q |
159 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
202 |
Q |
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| T |
1182388 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
1182431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 1181865 - 1181907
Alignment:
| Q |
50 |
aatgacaacctattac-acaatggattagcaaatcaacttgat |
91 |
Q |
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| T |
1181865 |
aatgacgacctattactacaatggattagcaaatcaacttgat |
1181907 |
T |
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