View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_15 (Length: 276)
Name: NF16944_low_15
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 43077642 - 43077895
Alignment:
| Q |
1 |
gacacactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctctttttgagg |
100 |
Q |
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| T |
43077642 |
gacacactgtatgatcatattggtaggcactattataaagattgttatattgaaggctctgttgatttcatatttggcaatgctctctctctttttgagg |
43077741 |
T |
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| Q |
101 |
taattaattagtttcattttcattttcaagatgaaatcgttct-aaaatttgactaatgaagttggtaataacatatataggggtgtcacgtgcatgcaa |
199 |
Q |
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| T |
43077742 |
taattaattagtttcattttcattttcaagatgaaatcgttctaaaaatttgactaatgaagttggtaataac----ataggggtgtcacgtgcatgcaa |
43077837 |
T |
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| Q |
200 |
tagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
257 |
Q |
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| T |
43077838 |
tagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
43077895 |
T |
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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 33965358 - 33965261
Alignment:
| Q |
4 |
acactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctctttttgaggt |
101 |
Q |
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| T |
33965358 |
acactttatgatcatattggtagacattactataaagattgttacattgaaggttctgttgatttcatatttggcaatgctctttctctatttgaggt |
33965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 33964273 - 33964188
Alignment:
| Q |
177 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacaggtt |
262 |
Q |
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| T |
33964273 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtt |
33964188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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