View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16944_low_19 (Length: 236)
Name: NF16944_low_19
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_19 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44949939 - 44949718
Alignment:
| Q |
1 |
catcttcgggaaagtatgtattatttacttgaaagtgtaaactgtaaagtacttttcattttcaattaaccatttgaacgagttagttaattacaccctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44949939 |
catcttcgggaaagtatgtattatttacttgaaagtgtaaactgtaaagtacttttcattttcaattaaccatttgaacgagttagttaattacaccctg |
44949840 |
T |
|
| Q |
101 |
cttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaagtgtctaagtcgctgacgaatgaagaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44949839 |
cttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaagtgtctaagtcgctgacgaatgaagaaca |
44949740 |
T |
|
| Q |
201 |
taaactctataacctcatatgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44949739 |
taaactctataacctcatatgt |
44949718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 44944009 - 44943809
Alignment:
| Q |
18 |
gtattatttacttgaaagtgtaaact-gtaaagtacttttcattttcaattaaccatttgaacgagttagttaattacaccctgcttgacatttttctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
44944009 |
gtattatttacttgaaagtgtaaacttgtaaagtatccttcatcttcaattaaccatttgaatgagttagttaattacgt--tgcttgacatttttctct |
44943912 |
T |
|
| Q |
117 |
tgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaac-aaaagtgtctaagtcgctgacgaatgaagaacataaactctataacct |
215 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44943911 |
tgaaaggaatgaaaagtttgcaagaatctgctttccgtcaacggaaacaacaaaaagtgtctaagtcgctgacgaatgaagaacatatactctataacct |
44943812 |
T |
|
| Q |
216 |
cat |
218 |
Q |
| |
|
||| |
|
|
| T |
44943811 |
cat |
44943809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 6470767 - 6470613
Alignment:
| Q |
18 |
gtattatttacttgaaagtgtaaactgtaaagtacttttcattttcaattaaccatttgaacgagttagttaattacaccctgc-ttgacatttttctct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||| || |||| ||||||||||||||| |
|
|
| T |
6470767 |
gtattatttacttgaaagtgtaaactgtaaagtacttccaattttcaattaaccatttgaatgatataattaattatactctgctttgacatttttctct |
6470668 |
T |
|
| Q |
117 |
tgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaa |
171 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || | |||||| ||||| |||||| |
|
|
| T |
6470667 |
tgtaaggaatgaaacgtttgcaagaatctggttcctctcaacagaaacgacaaaa |
6470613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 419020 - 419071
Alignment:
| Q |
120 |
aaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||| ||||| |||||| |
|
|
| T |
419020 |
aaggaatgaaacgtttgcaagaatctggttcctctcaacagaaacgacaaaa |
419071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 418959 - 418989
Alignment:
| Q |
19 |
tattatttacttgaaagtgtaaactgtaaag |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
418959 |
tattatttacttgaaagtgtaaactgtaaag |
418989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University