View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_2 (Length: 546)
Name: NF16944_low_2
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 58 - 546
Target Start/End: Complemental strand, 3018634 - 3018149
Alignment:
| Q |
58 |
ggcaaattgacgaatcaggatatgagcatcctcttgctgacatgcaatgtatggatgcgaaatggcaaaataccatcttatgtattcaattgttgtcttt |
157 |
Q |
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| T |
3018634 |
ggcaaattgacgaatcaggatatgagcatcctcctgctgacatgcaatgtatggatgcgaaatggcaaaataccatcttatgtattcaattgttgtcttt |
3018535 |
T |
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| Q |
158 |
agaccaatcggagcaggcatacccaaatctcaccgatttaacacataatcaagatattgcgctagttgtgttcaccttgggatttgcactcttatgtgga |
257 |
Q |
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| T |
3018534 |
agaccagtcggagcaggcatacccaaatctcactgatttaacacataatcaagatattatgctagttgt--tcaccttgggatttgcactcttatgtgga |
3018437 |
T |
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| Q |
258 |
tggcttgggatggtctggacgtaaccaaactggtgaaacacccgctttgacatgtatcgaaccctatgaggtatgtatccaagccatctaaaagaaagat |
357 |
Q |
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| T |
3018436 |
tggcttgggatggtctggacgtaaccaaactggcgcaacacccgctttgacatgtatcgaaccctatgaggtatgtatccaagccatctaaaagaaagat |
3018337 |
T |
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| Q |
358 |
tgattcactcaaatggacacgtctggcggtggggctgatacatcgttgtaatgtacccatccattattataaacaannnnnnnnaatgttccctgaataa |
457 |
Q |
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| T |
3018336 |
tgattcactcaaatggacacgtct-gcggtggggctgatacatcgttgtaatgtacccatccattattataaacaattttttttaatgttccctaaataa |
3018238 |
T |
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| Q |
458 |
tggtatagactagacacatccgttaaacaatgaacctaaaaaatgatttctttgcttataaagtcaccataggatgtaattagaatatt |
546 |
Q |
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| T |
3018237 |
cggtatagactagacacatccgttaaacaatgaacctaaaaaatgatttctttgcttataaagtcaccataggatgtaattagaatatt |
3018149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 3018692 - 3018658
Alignment:
| Q |
15 |
cacagaggcagaatatgtgtttactgcataacacc |
49 |
Q |
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| T |
3018692 |
cacagaggcagaatatgtgtttactgcataacacc |
3018658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 24141665 - 24141722
Alignment:
| Q |
342 |
catctaaaagaaagattgattcactcaaatggacacgtctggcggtggggctgataca |
399 |
Q |
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| T |
24141665 |
catccaaaataaagactgattcgctcgaacggacatgtctggcggtggggctgataca |
24141722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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