View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_3 (Length: 540)
Name: NF16944_low_3
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 47041800 - 47041287
Alignment:
| Q |
10 |
aatatcagcaatcaacaaatttctctcaattgaaccaagagttgtatccacaggtgatagaagagacatagcttctattccatttagcttcaattcatcc |
109 |
Q |
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| T |
47041800 |
aatagcagcaatcaacaaatttctctcaattgaaccaagagttgtatccacaggtgatagaagagacatagcttctattccatttagcttcaattcatcc |
47041701 |
T |
|
| Q |
110 |
aatgtataaagcctttgaggaacctgcacagtaattcacacaacaaatgaaacaagctacaaatacagtccctaatcttttatattcctaacttcataac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47041700 |
aatgtataaagcctttgaggaacctgcacagtaattcacacaacaaatgaaacaagctacaaatacagtccctaatcttt-atattcctaacttcataac |
47041602 |
T |
|
| Q |
210 |
tcaagactaacatcaaggatcattaatgtcactttaattaaccaacctgtctagccgcaccgaaacactgaagcccgttgggtttgccttgtaaatcctt |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47041601 |
tcaagactaacatcaaggatcattagtgtcactttaattaaccaacctgtctagccgcaccgaaacactgaagcccgttgggtttgccttgtaaatcctt |
47041502 |
T |
|
| Q |
310 |
aacaagtgcaagagcagctctatcatcccctttagttagctccttgtctacactttcaagcaattgttgtctgctgctagaaaccttggtggagcattgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47041501 |
aacaagtgcaagagcagctctatcatcccctttagttagctccttgtctacactttcaagcaattgttgtctgctgctagaaaccttggtggagcattgg |
47041402 |
T |
|
| Q |
410 |
attctcacccttgcaagtttaggttgcccgagggatgatgggagacccacgcccacgacacagacaccatgcatcagactcaaaccaatcatttaatcaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47041401 |
attctcacccttgcaagtttaggttgcccgagggatgatgggagacccacgcccacgacacagacaccatgcatcagactcaaaccaatcatttaatcaa |
47041302 |
T |
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| Q |
510 |
atatttggatgaaat |
524 |
Q |
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| T |
47041301 |
atatttggatgaaat |
47041287 |
T |
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