View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_5 (Length: 472)
Name: NF16944_low_5
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 139 - 455
Target Start/End: Original strand, 10137508 - 10137834
Alignment:
| Q |
139 |
agtacggctcaaattgatctacattttggggagaaaaactatccgatctactatcaaaaagtctttacaaagag----------ttagaagaaattagtt |
228 |
Q |
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| T |
10137508 |
agtacggctcaaattgatctacattttggagagaaaaactatccaatctactatcaaaaagtctttacaaagagatacaaaaagttagaagaaattagtt |
10137607 |
T |
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| Q |
229 |
ttaatagttctcaaaggtaaaacttcactttctatcctttttgactattttctcttaaacaagagttacaaaaatgacgaggtaattgtattcaattgct |
328 |
Q |
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| T |
10137608 |
tcaatagttctccaagataaaacttcactttctatcctttttcactattttctcttaaacaagagttacaaaaatgaccaggtaattgttttcaattgct |
10137707 |
T |
|
| Q |
329 |
ctccaaaagaaatcctcaatttctctcatttcctctctcaacctacttattataatcactccctaagatgtttacaatgtattttccaactttattcatc |
428 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10137708 |
ctccaaaagaaatcctcaatttctctcatttcttctctcaacctactcattataatcactccctaagatgtttacaatgtattttccaactttattcatc |
10137807 |
T |
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| Q |
429 |
tagtatagctaaaaccatgtcgtcact |
455 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
10137808 |
tagtctagctaaaaccatgtcgtcact |
10137834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 5301140 - 5301192
Alignment:
| Q |
319 |
ttcaattgctctccaaaagaaatcctcaatttctctcatttcctctctcaacc |
371 |
Q |
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| T |
5301140 |
ttcaattactcacaaaaagcaatccttaatttctctcatttcctctctcaacc |
5301192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 15965933 - 15965835
Alignment:
| Q |
320 |
tcaattgctctccaaaagaaatcctcaatttctctcatttcctctctcaacctact-tattataatcactccctaagatgtttacaatgtattttccaac |
418 |
Q |
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|||||| ||||||||| ||||||| ||||||||||| |||||||||| |||| ||| || ||||||| |||| ||| |||| ||||||| ||| ||||| |
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| T |
15965933 |
tcaatttctctccaaa-gaaatccccaatttctctcctttcctctctaaacccactcaatgataatcattccccaaggtgttcacaatgtgtttcccaac |
15965835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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