View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16944_low_6 (Length: 428)
Name: NF16944_low_6
Description: NF16944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16944_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 110 - 413
Target Start/End: Original strand, 25444887 - 25445204
Alignment:
| Q |
110 |
ccataacacacaatttcttgagaccagctcaagggagtaatttccacgattgtgtcctgtcaccaaagacgaaattaccaagttttctttctctataaat |
209 |
Q |
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| T |
25444887 |
ccataacacacgatttcttgagaccagctcaagggagtaatttccacgatcgtgtcctgtcaccaaagacgaaattactaagttttctttctctataaat |
25444986 |
T |
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| Q |
210 |
aagagttcttatgaaaaataatcagtcgaatgcttaatttttgaagccaactcctaataattggattaaactcatatttaccaaaattaatttta----- |
304 |
Q |
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| T |
25444987 |
aagagttcttatgaaaaataatcagtcgaatgcttaatttttgaagccgactcctaataagtggattaaactcatatttaccaaaattaattttacaaaa |
25445086 |
T |
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| Q |
305 |
----------caaaattaatcatttcctttttctaacaatttatttgacacatttaataaattaataaacctttnnnnnnncattagaatttttattgtc |
394 |
Q |
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| T |
25445087 |
tcaatttaatcaaaattaatcatttcctttttctaacaatttatttgacacatttaataaattaataagcctttaaaaaaacattagaatttttattgt- |
25445185 |
T |
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| Q |
395 |
caaaagttggagatactat |
413 |
Q |
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| T |
25445186 |
caaaagttggagatactat |
25445204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 25444266 - 25444359
Alignment:
| Q |
16 |
atgaatggagtgttgcatgggtgacttgnnnnnnntttggaccaagaaatttcatttataaaggcataaaagagcttagggttttgagaactga |
109 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25444266 |
atgaatggagtgttgcatgggtgacttgaaaaaaatttggaccaagaaatttcatagataaaggcataaaagagcttagggttttgagaactga |
25444359 |
T |
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