View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16945_high_11 (Length: 347)
Name: NF16945_high_11
Description: NF16945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16945_high_11 |
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| [»] scaffold0229 (1 HSPs) |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 346
Target Start/End: Original strand, 259 - 580
Alignment:
| Q |
25 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
358 |
T |
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| Q |
125 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
224 |
Q |
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| T |
359 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
458 |
T |
|
| Q |
225 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
324 |
Q |
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| T |
459 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
558 |
T |
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| Q |
325 |
ttgcataaccactgtttcagat |
346 |
Q |
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| T |
559 |
ttgcataaccactgtttcagat |
580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 346
Target Start/End: Original strand, 1274251 - 1274572
Alignment:
| Q |
25 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
124 |
Q |
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| T |
1274251 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
1274350 |
T |
|
| Q |
125 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
224 |
Q |
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| T |
1274351 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
1274450 |
T |
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| Q |
225 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
324 |
Q |
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| T |
1274451 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
1274550 |
T |
|
| Q |
325 |
ttgcataaccactgtttcagat |
346 |
Q |
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| T |
1274551 |
ttgcataaccactgtttcagat |
1274572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 101 - 346
Target Start/End: Original strand, 1 - 246
Alignment:
| Q |
101 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
100 |
T |
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| Q |
201 |
gttaagagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
300 |
Q |
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| T |
101 |
gttaagagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
200 |
T |
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| Q |
301 |
tttctctacttattcattcttgcattgcataaccactgtttcagat |
346 |
Q |
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| T |
201 |
tttctctacttattcattcttgcattgcataaccactgtttcagat |
246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 50439244 - 50439185
Alignment:
| Q |
37 |
agagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggcca |
96 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| | | |||| ||||||||| |
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| T |
50439244 |
agagctattgagaaaggaacatttactgagatgttggatcctacagtgactgattggcca |
50439185 |
T |
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