View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16945_high_16 (Length: 323)
Name: NF16945_high_16
Description: NF16945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16945_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 40522621 - 40522927
Alignment:
| Q |
1 |
tgagggtaatggaaaatgaaaaaccaataaaataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40522621 |
tgagggtaatggaaaatgaaaaaccaataaaataatatactaattcatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggtttt |
40522720 |
T |
|
| Q |
101 |
ttatgggttaggagggttcaaattctatgaaaaaataatcaaaggaaggatacaaaagtatataatttggcaagaaaataaagaaagttatatattagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40522721 |
ttatgggttaggagggttcaaattctatgaaaaaataa--------aggatacagaagtatataatttggcaagaaaataaagaaagttatatattaatt |
40522812 |
T |
|
| Q |
201 |
gagtgagagtgaattgattataactttgtgggggcaaatatagacagaaggaataaaatgtcaacttggtgtgaatgcattatgtatgtctgatgctttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40522813 |
gagtgagagtgaattgattataactttgtgggggcaaatatagacagaagcaataaaatgtcaacttggtgtgaatgcattatgtatgtctgttgctttt |
40522912 |
T |
|
| Q |
301 |
gga-gcaacagctag |
314 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
40522913 |
ggaggcaacagctag |
40522927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 40526569 - 40526690
Alignment:
| Q |
31 |
aataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggttttttatgggttaggagggttcaaattctatga |
130 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||| || ||||| || |||||||||||||||||||||| ||| ||| |||| |||||| ||| || | |
|
|
| T |
40526569 |
aataatatgctaatgcatttgagttctctgaaggattttcagaattaatggaagtgttgttcatggttttctatatgttgggagagttcaatttcaataa |
40526668 |
T |
|
| Q |
131 |
aaaaataatcaaaggaaggata |
152 |
Q |
| |
|
|||| |||||| | ||||||| |
|
|
| T |
40526669 |
taaaagaatcaaggaaaggata |
40526690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University