View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16945_high_20 (Length: 307)
Name: NF16945_high_20
Description: NF16945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16945_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 29691109 - 29691401
Alignment:
| Q |
6 |
agctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaagagaagggacag |
105 |
Q |
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| T |
29691109 |
agctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaagagaagggacag |
29691208 |
T |
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| Q |
106 |
aaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctattgaaatttgtttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29691209 |
aaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctattgaaatttgtttc |
29691308 |
T |
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| Q |
206 |
tttcaactaattaacgaaatcataatggcgttaagtaacaannnnnnnnnaggaaatggcattaaataaaatgattaccagcagtagtataat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29691309 |
tttcaactaattaacgaaatcataatggcgttaagtaacaatttttttataggaaatgacattaaataaaatgattaccagcagtagtataat |
29691401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 29719801 - 29719973
Alignment:
| Q |
6 |
agctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaagagaagggacag |
105 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29719801 |
agctagggtttgtgatctgagattgaaaggaatgaccttgttcttagggttttaatttagtcaaaaaaattgtttgaaagtaaaagaagagaagggacag |
29719900 |
T |
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| Q |
106 |
aaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcacc-agttcaaattccaatgactcatat |
177 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
29719901 |
aaaggttaggtactttgttgtcttgtgatgagtgggtcatgtttcacctagttcaaatcccaatgacacatat |
29719973 |
T |
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