View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16945_high_22 (Length: 303)
Name: NF16945_high_22
Description: NF16945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16945_high_22 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 48932155 - 48932444
Alignment:
| Q |
14 |
gagatgaagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaaca |
113 |
Q |
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| T |
48932155 |
gagatgaagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaaca |
48932254 |
T |
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| Q |
114 |
aaagcattagagataaaactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttaga |
213 |
Q |
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| T |
48932255 |
aaagcattagagataaaactgctgcactgaatagcgtgaaaagccattttttttcagctcccataactgatttcactacgtgggcatatgaaagtttaga |
48932354 |
T |
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| Q |
214 |
ttttgagaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgt |
303 |
Q |
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| T |
48932355 |
ttttgagaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaaactctatgt |
48932444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 9392501 - 9392220
Alignment:
| Q |
20 |
aagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagca |
119 |
Q |
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| T |
9392501 |
aagtatgcaaaagccagagggtaatgagaaccatgttgaacaagagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagca |
9392402 |
T |
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| Q |
120 |
ttagagataaaactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttga |
219 |
Q |
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| T |
9392401 |
ttagagataaaactgctacactgaatagcgtgaaaagcca-tttttttcagctcccataactaatttcactatgtgggcatatgaaatcaacgattttga |
9392303 |
T |
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| Q |
220 |
gaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgt |
303 |
Q |
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| T |
9392302 |
gaagtggg-ttggttaaagtttggattttgaaactatttgtgttaatgggtcattgaagatcttggatttttgaaactctatgt |
9392220 |
T |
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