View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16946_low_1 (Length: 240)
Name: NF16946_low_1
Description: NF16946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16946_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 40667073 - 40667278
Alignment:
| Q |
15 |
aggcccagaattgcttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctctttttt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40667073 |
aggcccagagttgcttacaatgtggtttggtgaaagtgatgccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctctttttt |
40667172 |
T |
|
| Q |
115 |
gatgagcttgactccattgccactcaggtttgtttctagttactataaactcatgcattgttatgttattatgctttaaccatggctgctactcaagtga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40667173 |
gatgagcttgactccattgccactcaggtttgtttctagttactataaactcatgcattgctatgttattatgctttaaccatggctgctactcaagtga |
40667272 |
T |
|
| Q |
215 |
ggtata |
220 |
Q |
| |
|
|||||| |
|
|
| T |
40667273 |
ggtata |
40667278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 40722932 - 40722747
Alignment:
| Q |
15 |
aggcccagaattgcttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctctttttt |
114 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40722932 |
aggcctagaattacttacaatgtggtttggtgaaagtgaagccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctctttttt |
40722833 |
T |
|
| Q |
115 |
gatgagcttgactccattgccactcaggtttg-tttctagttactataaactcatgcattgttatgttattatgctttaaccatgg |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||||||||||||||| || |||| ||||||||||||||||||| |||| |
|
|
| T |
40722832 |
gatgagcttgattccattgccactcaggttggttttctagttactataaactcctggattgctatgttattatgctttaacgatgg |
40722747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 41091922 - 41091809
Alignment:
| Q |
31 |
acaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactcca |
130 |
Q |
| |
|
|||||||||||||| ||||||||||| || || |||||||| ||||||||||| | || |||||||||||||| || |||||||| |||||||||| |
|
|
| T |
41091922 |
acaatgtggtttggagaaagtgaggcaaacgtgagggaaatttttgacaaggcccgtggttctgctccatgtgtcctattctttgatgaacttgactcca |
41091823 |
T |
|
| Q |
131 |
ttgccactcaggtt |
144 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
41091822 |
ttgcaactcaggtt |
41091809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 27978407 - 27978528
Alignment:
| Q |
26 |
tgcttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttga |
125 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| | || |||||||||||||| || |||||||| ||||| |
|
|
| T |
27978407 |
tgctcacaatgtggtttggagaaagtgaggctaatgtgagggaaatttttgacaaagctcgtggttctgctccatgtgtccttttctttgatgaacttga |
27978506 |
T |
|
| Q |
126 |
ctccattgccactcaggtttgt |
147 |
Q |
| |
|
|| ||||| |||||||||||| |
|
|
| T |
27978507 |
ttctattgcaactcaggtttgt |
27978528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University