View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16947_low_1 (Length: 268)
Name: NF16947_low_1
Description: NF16947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16947_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 139778 - 140016
Alignment:
| Q |
20 |
cccagaccatgcaagctctgcatatgatcaatcaagagtgtatgcatatgtctttaaatgggtgtttatcacggtgatggacgtaaggcgtgaagaaagc |
119 |
Q |
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| T |
139778 |
cccagaccatgcaagctctgcatatgatcaatcaagagtgtatgcatatgtctttaaatgggtgtttatcacggtgatggacgtaaggcgtgaagaaagc |
139877 |
T |
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| Q |
120 |
atctataggcagcaacggatcaagatgatattatatacaacgcttttgtctgacaagatggtgggttctaacaagaaaaatagatactccttgatggcgt |
219 |
Q |
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| T |
139878 |
atctataggcagcaacggatcaagatgatattatatac-acgcttttgtctgacaagatggtgggttctaacaagaaaaatagatactccttgatggcgt |
139976 |
T |
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| Q |
220 |
gctgtttgtgcaaatctctacccaataaatcaccctttgc |
259 |
Q |
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| T |
139977 |
gctgtttgtgcaaatctctacccaataaatcaccctttgc |
140016 |
T |
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