View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16947_low_3 (Length: 215)
Name: NF16947_low_3
Description: NF16947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16947_low_3 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
| [»] scaffold1408 (1 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33388444 - 33388230
Alignment:
| Q |
1 |
tactcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388444 |
tactcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgat |
33388345 |
T |
|
| Q |
101 |
tcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388344 |
tcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaa |
33388245 |
T |
|
| Q |
201 |
atttggagcattgca |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33388244 |
atttggagcattgca |
33388230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 33410288 - 33410075
Alignment:
| Q |
2 |
actcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgatt |
101 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||| |
|
|
| T |
33410288 |
actcccacgagaaacacatattgcttgccatcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatg |
33410189 |
T |
|
| Q |
102 |
caattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaa |
201 |
Q |
| |
|
|||||||| ||||||| || ||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
33410188 |
caattgaaggtttacattcgctagaaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttaga |
33410089 |
T |
|
| Q |
202 |
tttggagcattgca |
215 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
33410088 |
tttgcagcattgca |
33410075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 33304754 - 33304554
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
33304754 |
acacatatttgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgttt |
33304655 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
| |||| ||||||| |||||| |||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33304654 |
atactcgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgc |
33304555 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
33304554 |
a |
33304554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 33644283 - 33644470
Alignment:
| Q |
20 |
tatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacact |
119 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||| |||||||||||| ||| | ||||| || ||||| |||||||||||||||||||| | |
|
|
| T |
33644283 |
tattcgttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacatt |
33644382 |
T |
|
| Q |
120 |
cactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttgga |
207 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644383 |
cgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttgga |
33644470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 33399324 - 33399132
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| ||| |
|
|
| T |
33399324 |
acacatatttgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagattt |
33399225 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttgga |
207 |
Q |
| |
|
||| | ||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33399224 |
acattggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttgga |
33399132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 9167021 - 9166822
Alignment:
| Q |
16 |
cacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttta |
115 |
Q |
| |
|
|||||||||||||| ||| ||| ||| ||| ||||||||||| ||||||||||||||| ||| ||||||| ||| | || ||| |||||||||||||| |
|
|
| T |
9167021 |
cacatatttgttgcattccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgttta |
9166922 |
T |
|
| Q |
116 |
cactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
| | ||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166921 |
cggtggctagaaagattaaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
9166822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 31562596 - 31562758
Alignment:
| Q |
52 |
tttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgat |
151 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||| ||||| || ||| |||||||||||||| ||| ||||||| ||||||||||||||||||| || |
|
|
| T |
31562596 |
tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat |
31562695 |
T |
|
| Q |
152 |
tttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562696 |
tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgc |
31562758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 33359104 - 33358937
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||| |||| | |||| ||||| ||||||| ||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
33359104 |
attgtttgcgtgttgttgcctttagtttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttagggggaaa |
33359005 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
33359004 |
cgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgca |
33358937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 33057830 - 33057639
Alignment:
| Q |
24 |
tgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcact |
123 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||||| |||||||| |||||||| |||||| || || || ||| |||||||||||||||| | || |
|
|
| T |
33057830 |
tgttgccttccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggct |
33057731 |
T |
|
| Q |
124 |
agaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33057730 |
agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgca |
33057639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 33285885 - 33285688
Alignment:
| Q |
18 |
catatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttaca |
117 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| ||||| | || |||||||||||||| | |
|
|
| T |
33285885 |
catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata |
33285786 |
T |
|
| Q |
118 |
ctcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
| ||||||| |||||| |||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33285785 |
ttggctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaatttggagcattgca |
33285688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 33262896 - 33262696
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||| | ||||||| ||| ||| ||| ||| ||||||||||||| |||||||| |||||||| ||||| ||||| || | |||||||||| || |
|
|
| T |
33262896 |
acacatctctgttgccttccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgctt |
33262797 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
||| | ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262796 |
acattggctagaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgc |
33262697 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
33262696 |
a |
33262696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 33272047 - 33271895
Alignment:
| Q |
63 |
ttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacact |
162 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||| |||||||||||||||| | ||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
33272047 |
ttgacattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacact |
33271948 |
T |
|
| Q |
163 |
acctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33271947 |
acctagcctgaggaagctttccaaacttgtatatttaaatttggaacattgca |
33271895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 28870014 - 28870107
Alignment:
| Q |
122 |
ctagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||||| |||||| ||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28870014 |
ctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgca |
28870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28869928 - 28870012
Alignment:
| Q |
2 |
actcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaa |
86 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| || |||||||| |||||||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
28869928 |
actcccacgagaaacacatacttgttgccatccttgaatagcttatattgtttgtgtaacgttgacgttagcttttgccatctaa |
28870012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 884 - 717
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
884 |
attgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaa |
785 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
784 |
taattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgca |
717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 6630 - 6463
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6630 |
attgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaa |
6531 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6530 |
taattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgca |
6463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 17440639 - 17440818
Alignment:
| Q |
36 |
tgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaa |
135 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||| | ||||| ||||| || ||| |||||||||||||||| | |||||| |||||| |
|
|
| T |
17440639 |
tgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaaa |
17440738 |
T |
|
| Q |
136 |
tttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
17440739 |
tttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgca |
17440818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 31157381 - 31157287
Alignment:
| Q |
121 |
actagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31157381 |
actagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctttccaaacttgtatatttaaacttggagcattgca |
31157287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 31504032 - 31504116
Alignment:
| Q |
131 |
ttaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31504032 |
ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgca |
31504116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 31478846 - 31478931
Alignment:
| Q |
130 |
attaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
31478846 |
attaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaagcttagagcattgca |
31478931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 31498853 - 31498986
Alignment:
| Q |
82 |
tctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctt |
181 |
Q |
| |
|
|||||| ||| | |||||| |||||| ||||||||| | ||||| | |||||||||||||||||| | ||||||||| |||||||| ||||| | ||| |
|
|
| T |
31498853 |
tctaaaccaactccccgatgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctt |
31498952 |
T |
|
| Q |
182 |
tccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
||||||||||||| |||||| || || ||||||| |
|
|
| T |
31498953 |
tccaaacttgtatgtttaaacttagaacattgca |
31498986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 31148466 - 31148375
Alignment:
| Q |
122 |
ctagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattg |
213 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||||| |||||||| | |||||||| |||| ||||| ||||||||| ||| ||||||| |
|
|
| T |
31148466 |
ctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaacttgcagcattg |
31148375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 31472411 - 31472462
Alignment:
| Q |
150 |
attttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaa |
201 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
31472411 |
attttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaa |
31472462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 31526569 - 31526488
Alignment:
| Q |
123 |
tagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaattt |
204 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| | ||||| || || | ||||| ||||||| |||||| ||||| |
|
|
| T |
31526569 |
tagaaagattaaatttagggggaaacaattttgtgacattgcctagtttcagagaactttcaaaacttgcatatttgaattt |
31526488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 6785240 - 6785317
Alignment:
| Q |
130 |
attaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttgga |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||| ||| | ||||||||||||| ||||||||||| ||||| |
|
|
| T |
6785240 |
attaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttgga |
6785317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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