View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16948_high_17 (Length: 356)

Name: NF16948_high_17
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16948_high_17
NF16948_high_17
[»] chr3 (3 HSPs)
chr3 (77-338)||(40854180-40854440)
chr3 (1-106)||(1326429-1326536)
chr3 (1-29)||(40854148-40854176)
[»] chr6 (2 HSPs)
chr6 (199-338)||(7212271-7212410)
chr6 (1-108)||(23267273-23267380)
[»] chr4 (3 HSPs)
chr4 (1-109)||(32179239-32179344)
chr4 (1-108)||(12105350-12105459)
chr4 (1-99)||(46644132-46644232)
[»] chr5 (1 HSPs)
chr5 (1-108)||(18598933-18599041)
[»] chr1 (1 HSPs)
chr1 (1-74)||(9380039-9380112)
[»] chr2 (2 HSPs)
chr2 (1-81)||(5568335-5568415)
chr2 (9-81)||(6408310-6408382)
[»] chr7 (1 HSPs)
chr7 (51-108)||(12489527-12489586)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 77 - 338
Target Start/End: Original strand, 40854180 - 40854440
Alignment:
Q  77 gtgtaccaaa-agtggtctatgtatctttttccaaataatttagaagtgtcatgaattgattggttgttaactacttgtttgttatacgtatggataaac 175  Q
    |||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40854180 gtgtaccaaagagtggt-tatgtatctttt-ccaaatgatttagaagtgtcatgaattgattggttgttaactacttgtttgttatacgtatggataaac 40854277  T
Q  176 tgtcgcatattatcaatgatacaatgaacagagggtgactagttaaagcatgcaacaagtnnnnnnnnttggtggaatcacaaagagtttcaacccatca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  40854278 tgtcgcatattatcaatgatacaatgaacagagggtgactagttaaagcatgcaacaagtaaaaaaaattggtggaatcacaaagagtttcaacccatca 40854377  T
Q  276 aattggtctcattcaataaggaacaacagtactaaccaagcatcattgaaaagggctcttgtt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40854378 aattggtctcattcaataaggaacaacagtactaaccaagcatcattgaaaagggctcttgtt 40854440  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1326429 - 1326536
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaaa--gtggtctatgt 98  Q
    ||||||||||  | ||||| |||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||  |||||||||||    
T  1326429 ttggagatgagaagagagtagttgtgagatgaaattcctaaaatgtcccttgccacatcagcagtggtacaaaagagtgtaccaaaagggtggtctatgt 1326528  T
Q  99 atcttttt 106  Q
    || |||||    
T  1326529 attttttt 1326536  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40854148 - 40854176
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgaga 29  Q
    |||||||||||||||||||||||||||||    
T  40854148 ttggagatgaagaaagagtggttgtgaga 40854176  T

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Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 199 - 338
Target Start/End: Complemental strand, 7212410 - 7212271
Alignment:
Q  199 atgaacagagggtgactagttaaagcatgcaacaagtnnnnnnnnttggtggaatcacaaagagtttcaacccatcaaattggtctcattcaataaggaa 298  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7212410 atgaacagagggtgactagttaaagcatgcaacaagtaaaaaaaattggtggaatcacaaaaagtttcaacccatcaaattggtctcattcaataaggaa 7212311  T
Q  299 caacagtactaaccaagcatcattgaaaagggctcttgtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7212310 caacagtactaaccaagcatcattgaaaagggctcttgtt 7212271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23267380 - 23267273
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaa--agtggtctatgt 98  Q
    ||||||||||| | ||||||| ||||||||||||| |||||||| ||||||||||||||    || ||||||||| || |||||||  ||||||||||||    
T  23267380 ttggagatgaaaagagagtggctgtgagatgaaatccctaaaatgtcccttgccacatcaatagt-gtacaaagg-gtctaccaaaagagtggtctatgt 23267283  T
Q  99 atctttttcc 108  Q
    ||||||||||    
T  23267282 atctttttcc 23267273  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32179239 - 32179344
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaaagtggtctatgtat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||    ||||||||||||||    
T  32179239 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtacaaaggggtgtac---gagtggtctatgtat 32179335  T
Q  101 ctttttcca 109  Q
    |||||||||    
T  32179336 ctttttcca 32179344  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12105350 - 12105459
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaaa--gtggtctatgt 98  Q
    ||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||| || |||||| ||| | |||||||||||  |||||||||||    
T  12105350 ttggagatgaaaagagagttgttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgt 12105449  T
Q  99 atctttttcc 108  Q
    ||||||||||    
T  12105450 atctttttcc 12105459  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 46644232 - 46644132
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaa--agtggtctatgt 98  Q
    ||||||||||  | ||||| ||||| |||||||||||||||||| ||||||||||||||  | |||||||||| | ||||||||||  ||||||||||||    
T  46644232 ttggagatgagaagagagtagttgtaagatgaaattcctaaaatgtcccttgccacatcaccagtggtacaaaagggtgtaccaaaagagtggtctatgt 46644133  T
Q  99 a 99  Q
    |    
T  46644132 a 46644132  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18599041 - 18598933
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgtaccaaa--agtggtctatgt 98  Q
    ||||||||||| | ||||||||||||||||| ||||| |||||| |||||| |||||||  | |||||||||||| ||||||||||  ||||||||||||    
T  18599041 ttggagatgaaaagagagtggttgtgagatgtaattcttaaaatgtcccttaccacatcaacagtggtacaaagg-gtgtaccaaaagagtggtctatgt 18598943  T
Q  99 atctttttcc 108  Q
    |||| |||||    
T  18598942 atctatttcc 18598933  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9380039 - 9380112
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaag 74  Q
    ||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||    
T  9380039 ttggagatgaaaagagagtggttgtgagatgaaatccctaaaatgtcccttgccacatcagcagtggtacaaag 9380112  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5568335 - 5568415
Alignment:
Q  1 ttggagatgaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgta 81  Q
    ||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||||| || |||||||||||| |||||    
T  5568335 ttggagatgaaaagagagtggatgtgagatgaaatttctaaaatgtcccttgccacatcagcagtggtacaaaggggtgta 5568415  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 6408310 - 6408382
Alignment:
Q  9 gaagaaagagtggttgtgagatgaaattcctaaaatttcccttgccacatcggcggtggtacaaaggagtgta 81  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||| |||||    
T  6408310 gaagagagagtggttgtgagatgaaattcctaaaatatcccttgccacatgagcagtggtacaaaggggtgta 6408382  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 12489586 - 12489527
Alignment:
Q  51 tgccacatcggcggtggtacaaaggagtgtacc--aaaagtggtctatgtatctttttcc 108  Q
    ||||||||| || |||||||||||| |||||    |||||||||||||||||||||||||    
T  12489586 tgccacatcagcagtggtacaaaggggtgtatattaaaagtggtctatgtatctttttcc 12489527  T

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