View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_18 (Length: 340)
Name: NF16948_high_18
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 51197113 - 51196800
Alignment:
| Q |
16 |
gtaatttcatataattccttagtagcattattatcagtgtcataacatagattttttgaagcagagagaaaaagaagaacctataaggatggaataccat |
115 |
Q |
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| T |
51197113 |
gtaatttcatataattccttagtagcattattatcagtgtcataacatagattttttgaagcagagagaaaaagaagaacctataaggatggaataccat |
51197014 |
T |
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| Q |
116 |
atgtttgagaagaatacattttgcaatggggcagcgtttgtgcctagagatggaggtgtcgaagaagatgatggttggatcattacttttgttcacaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51197013 |
atgtttgagaagaatacattttgcaatggggcagcgtttgtgcctagagatggaggtgtcgaagaagatgatggtttgatcattacttttgttcacaatg |
51196914 |
T |
|
| Q |
216 |
aagatactaacacatctcaagtaggttgagtagctttgtattcttgaaattaattacacttgttgaaaattaggatagttattaactcatttatcaattt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51196913 |
aagatactaacacatctcaagtaggttgagtagctttgtattcttgaaattaattacacttgttgaaaattaggatagttattaactcatttatcgattt |
51196814 |
T |
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| Q |
316 |
tctttcaggttcat |
329 |
Q |
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|||||||||||||| |
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| T |
51196813 |
tctttcaggttcat |
51196800 |
T |
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