View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_19 (Length: 326)
Name: NF16948_high_19
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 2484425 - 2484135
Alignment:
| Q |
1 |
tcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
100 |
Q |
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||||| |||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484425 |
tcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
2484326 |
T |
|
| Q |
101 |
ggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaaccaaaccgaattcaaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2484325 |
ggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacatacca--------------aaccgaattcaaa |
2484240 |
T |
|
| Q |
201 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484239 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
2484140 |
T |
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