View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_2 (Length: 725)
Name: NF16948_high_2
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 52092082 - 52092437
Alignment:
| Q |
18 |
attagaaggggatgcagtatttcacagttacaatcttatatcattaatgggaactatattgagctcggaaaagatgcaaaagaagctgacaaaaggttcc |
117 |
Q |
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| T |
52092082 |
attagaaggggatgcagtatttcacagttacaatcttatatcattaatgggaactatattgagctcggaaaagatgcaaaagaagctgacaaaaggttcc |
52092181 |
T |
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| Q |
118 |
ttttacacttccatgctttggaacacataacagcacatagacaaagtataaacaaagatacacacacaacttgcaactatttttatcacatgaattctat |
217 |
Q |
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| T |
52092182 |
ttttacacttccatgctttggaacacataacagcacatagacaa-gtataaacaaagatacacacacaacctgcaactatttttatcacatgaattctat |
52092280 |
T |
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| Q |
218 |
ctccacaaacaagatacttaatgggtttcctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttg |
317 |
Q |
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| T |
52092281 |
ctccacaaacaagatacttaatgggtttcctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttg |
52092380 |
T |
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| Q |
318 |
taaatgttagnnnnnnntcatcatcaaccaaactacaattctttaatatatgtcatg |
374 |
Q |
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| T |
52092381 |
taaatgttagaaaaaaatcatcatcaaccaaactacaattctttaatatatgtcatg |
52092437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 403 - 707
Target Start/End: Original strand, 52092466 - 52092768
Alignment:
| Q |
403 |
tgaagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggttt |
502 |
Q |
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| T |
52092466 |
tgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtt-caataaaggttt |
52092564 |
T |
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| Q |
503 |
ccacttgtcgtcactaggnnnnnnnntgagagggagccataatctt----tctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
598 |
Q |
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| T |
52092565 |
ccacttgtcgtcacta----caaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
52092660 |
T |
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| Q |
599 |
cacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttc |
698 |
Q |
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| T |
52092661 |
cacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcacaccgttc |
52092759 |
T |
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| Q |
699 |
caagtccaa |
707 |
Q |
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||||||||| |
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| T |
52092760 |
caagtccaa |
52092768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 405 - 707
Target Start/End: Original strand, 52082272 - 52082572
Alignment:
| Q |
405 |
aagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggtttcc |
504 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
52082272 |
aagattgaaatgttgtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggtt-caataaaggtttcc |
52082370 |
T |
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| Q |
505 |
acttgtcgtcactaggnnnnnnnntgagagggagccataatctttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacaca |
604 |
Q |
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| T |
52082371 |
acttgtcgtcactaggacaaaaa-tgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacaca |
52082469 |
T |
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| Q |
605 |
cctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtc |
704 |
Q |
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| T |
52082470 |
cattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtc |
52082569 |
T |
|
| Q |
705 |
caa |
707 |
Q |
| |
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||| |
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| T |
52082570 |
caa |
52082572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 91 - 327
Target Start/End: Original strand, 52081945 - 52082190
Alignment:
| Q |
91 |
atgcaaaagaagctgacaaaaggttccttttacacttccatgctttggaacacataacagcacatagacaaagtataaacaaagatacacacacaacttg |
190 |
Q |
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| T |
52081945 |
atgcaaaagaaaccgacaaaatgtaccttttacacttccatcctttggaacacataa----------acaa-gcataaacaatgatacacacag--cttg |
52082031 |
T |
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| Q |
191 |
caactatttttatcacatgaattctatctccacaaacaagatacttaatgg----------------------gtttcctttacttctaatcaatcaata |
268 |
Q |
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| T |
52082032 |
gaactatttttatcacatgaatgctatctccacaaacaagatacttaatggtcaaagatatatgtcatgatgagtttcctttacttctaatcaatcaata |
52082131 |
T |
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| Q |
269 |
ataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttgtaaatgttag |
327 |
Q |
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|||||||||| | |||||| ||| |||||||||||||||| | ||||||||||||||| |
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| T |
52082132 |
ataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaatgttag |
52082190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 626 - 685
Target Start/End: Original strand, 1754429 - 1754488
Alignment:
| Q |
626 |
ttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatat |
685 |
Q |
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| T |
1754429 |
ttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatat |
1754488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 682
Target Start/End: Original strand, 6006235 - 6006293
Alignment:
| Q |
624 |
atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtga |
682 |
Q |
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|||||||||||||||| || ||||||||||||| || ||| ||||||| |||| ||||| |
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| T |
6006235 |
atttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtga |
6006293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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