View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_24 (Length: 276)
Name: NF16948_high_24
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_24 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 6915097 - 6915353
Alignment:
| Q |
11 |
aaaacaacaatattgttcgattccaaaccttcagaagccttcttggcaagcattgctgacacagagttataaccggatgccttggccgaatgaactagta |
110 |
Q |
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| T |
6915097 |
aaaacaacaatattgttcgattccaaaccttcagaagccttcttggcaagcattgctgacacagagttataaccggatgccttggccgaatgaacaagta |
6915196 |
T |
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| Q |
111 |
taccagtaggttgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaatggtagaaaatgaagactacaataccaaattca |
210 |
Q |
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| T |
6915197 |
taccagtaggttgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaatggtagaaaatgaagactacaataccaaattca |
6915296 |
T |
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| Q |
211 |
aaacacattatcagaccacaacttacatgcaacgactgcagttgcagatgcctttgc |
267 |
Q |
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| T |
6915297 |
aaacacattatcagaccacaacttacatgcaacgactgcagttgcagatgcctttgc |
6915353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 3796056 - 3796000
Alignment:
| Q |
155 |
tctttcagaaccaacacacaaaatggtagaaaatgaagactacaataccaaattcaa |
211 |
Q |
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| T |
3796056 |
tctttcggaactaacacgcaaaatggtacaaaatgaagactacgacaccaaactcaa |
3796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 153168 - 152927
Alignment:
| Q |
22 |
attgttcgattccaaaccttcagaagccttcttggcaagcattgctgacacagagttataaccggatgccttggccgaatgaactagtataccagtaggt |
121 |
Q |
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| T |
153168 |
attgttcgtttccaaactttcagaagccttctttctaagcattgctgacacagagttaaaacccgatgccttggccgaatgaactagtataccagttggt |
153069 |
T |
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| Q |
122 |
tgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaatggtagaaaatgaagactacaataccaaattcaaaacacattat |
221 |
Q |
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| T |
153068 |
tgttcacctctttttttcctacaaggttactcgtctttcagaaccaacacacaaaatggtacaaaatgaaaaccacaacaccaaactcaaaatggatatt |
152969 |
T |
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| Q |
222 |
cagaccacaacttacatgcaacgactgcagttgcagatgcct |
263 |
Q |
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| T |
152968 |
gaaaccacaacttacatgcaaaaactgcagttgcaaatgcct |
152927 |
T |
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