View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16948_high_3 (Length: 670)

Name: NF16948_high_3
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16948_high_3
NF16948_high_3
[»] chr3 (1 HSPs)
chr3 (1-655)||(38435305-38435947)


Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Complemental strand, 38435947 - 38435305
Alignment:
Q  1 tgaccattgctgccagaaacatctttcaccatctctttgaacatattcccaacggatctaaatgggtggttcattccatccttcactctcataacaagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435947 tgaccattgctgccagaaacatctttcaccatctctttgaacatattcccaacggatctaaatgggtggttcattccatccttcactctcataacaagtg 38435848  T
Q  101 aaacctctgatagttgccaagccacagtgaggacaatcatcgctgaaagaagacaatgagtcacaaaattctgcttcttcacctttttcaactctttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435847 aaacctctgatagttgccaagccacagtgaggacaatcatcgctgaaagaagacaatgagtcacaaaattctgcttcttcacctttttcaactctttgat 38435748  T
Q  201 tatctcatccttgtcaccatccacagtttcaccttttgttttctcaattgcagaatccacctgctttaaaggactagatgcttcagattgcttaaccgtt 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435747 tatctcatccttgtcaccatccgcagtttcaccttttgttttctcaattgcagaatccacctgctttaaaggactagatgcttcagattgcttaaccgtt 38435648  T
Q  301 tcacctcctttagacatttccaactgctaataaatcaaattgagcaaaatgaacataaaacttgtttaatttgaaagacatcatatgacatgcaaaatgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435647 tcacctcctttagacatttccaactgctaataaatcaaattgagcaaaatgaacataaaacttgtttaatttgaaagacatcatatgacatgcaaaatgg 38435548  T
Q  401 acataaaatattgtgtttgagacattaagcatgaattgtaaaatacctgagacacagagagtaggtgggagagagcttgttggtattcagtttcgtggtc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  38435547 acataaaatattgtgtttgagacattaagcatgaattgtaaaatacctgagacacagagaataggtgggagagagtttgtttgtattcagtttcgtggtc 38435448  T
Q  501 tttaaggttgttattattattgtcacttttgttgtgaatatgtttctgaattgcttggtctatgagttcaagcctcctatcttgctccataaccgccgga 600  Q
    |||||||      |||| ||||      |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435447 tttaagg------ttatgattg------ttgtcgtgaatatgtttctgaattgcttggtctatgagttcaagcctcctatcttgctccataaccgccgga 38435360  T
Q  601 gagaaatctttgtttagactttgttctaaccgaccaccgctaaaagctctatttt 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435359 gagaaatctttgtttagactttgttctaaccgaccaccgctaaaagctctatttt 38435305  T

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