View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_5 (Length: 649)
Name: NF16948_high_5
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Original strand, 10120365 - 10120982
Alignment:
| Q |
11 |
gaagcaaaggtagtgatcaagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtat |
110 |
Q |
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| T |
10120365 |
gaagcaaaggtagtgatcaagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtat |
10120464 |
T |
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| Q |
111 |
tcatttggaatatccctttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttgcagcta |
210 |
Q |
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| T |
10120465 |
tcatttggaatatccctttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttacagcta |
10120564 |
T |
|
| Q |
211 |
caaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgct |
310 |
Q |
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| T |
10120565 |
caaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgct |
10120664 |
T |
|
| Q |
311 |
taaaggatcctataatttttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattctnnnnnnnng |
410 |
Q |
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| T |
10120665 |
taaagtatcctataatttttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattctaaaagaaag |
10120764 |
T |
|
| Q |
411 |
ttgtatactactcattcatgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatatcattgttg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
10120765 |
ttgtatactactcattcatgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatgttattgttg |
10120864 |
T |
|
| Q |
511 |
gtttcattgatacaggtaggaattcttattcttagagtatggtgatgcctttttgataacttctatgtaactataccttcattctcacgtacaacatgca |
610 |
Q |
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| T |
10120865 |
gtttcattgatacaggt-----gtcgtattcttagagtatggtgatgcctttttgataacttctatgtaactataccttcattctcacgtacaacatgca |
10120959 |
T |
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| Q |
611 |
ccttttcttagaagtctcgtgaa |
633 |
Q |
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| T |
10120960 |
ccttttcttagaagtctcgtgaa |
10120982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 523
Target Start/End: Complemental strand, 30629948 - 30629840
Alignment:
| Q |
415 |
atactactcattcatgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatatcattgttggttt |
514 |
Q |
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|||| |||||||||||||| || ||||||||||| |||||| |||||||||| | | | || |||||| ||||| |||| ||||||||| ||||||| |
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| T |
30629948 |
atacaactcattcatgggatttcatgggacttttagatgatcaaaccatggaaactcttggctactcagttaaaaatcaagaaaatatcatcattggttt |
30629849 |
T |
|
| Q |
515 |
cattgatac |
523 |
Q |
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||||||||| |
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| T |
30629848 |
cattgatac |
30629840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 30630415 - 30630322
Alignment:
| Q |
177 |
ttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttc |
270 |
Q |
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||||| ||||||| ||||| ||||||| ||||| | |||||| |||| |||||||||||| ||| | || |||||||||||| | ||||||| |
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| T |
30630415 |
ttgaagaagcacaagcttctcatatttatagctatagacatggattcagaggctttgcagctaagctcactgatgaacaagcttccaaaatttc |
30630322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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