View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_6 (Length: 612)
Name: NF16948_high_6
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 54804225 - 54803945
Alignment:
| Q |
11 |
attattcttcatttgtgaaccagagttgagtgaacgattattaatgggaatagataggtctgataagaaataaagcatatatgattttattccttacgaa |
110 |
Q |
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| T |
54804225 |
attattcttcatttgtgaaccagagttgagtgaacgattattaatgggaatagataggtctgataagaaataaagcttatatgattttattccttactaa |
54804126 |
T |
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| Q |
111 |
agattaaaattgctgataaaataacaagtgagtaagctcaaatggttaatgagttttagctaaagataaataaataaggagaacttgtgtttgaatctcg |
210 |
Q |
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| T |
54804125 |
agattaaaattgctgataaaataataagtgagtaagctcaaatggttaatgagttttagttaaagataaataaataaggagaacttgtgtttgaatctcg |
54804026 |
T |
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| Q |
211 |
gttcaaacatttattgatcaaagtttacttatctttcagttagaaactccgcattaccaaagatctattctctcaattaag |
291 |
Q |
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| T |
54804025 |
gttcaaacatttattgatcaaagtttacttatctttcagttagaaactccgcattaccaaagatcttttctctcaattaag |
54803945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 339 - 595
Target Start/End: Complemental strand, 54803893 - 54803637
Alignment:
| Q |
339 |
agaaaaatgtatatcataattccttgtcccggttgaaaatttcaaattattctccaaaattcattgtcagccttccaattgaaatatcgttacatgcaaa |
438 |
Q |
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| T |
54803893 |
agaaaaatgtatatcataattccttgtcccggttgaaaatttcaaattattctccaaaattcattgtcagccttccaattgaaatatcgttacatgcaaa |
54803794 |
T |
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| Q |
439 |
gatatatatgccaattcaatcgtggccattaagtttctaactattgaactgctttccatgttagttactatctttgttgggactactaaagattacatgc |
538 |
Q |
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| T |
54803793 |
gatatatatgccaattcaatcgtggccattaagtttctaactattgaactgctttccatgttagttactatctttgttgggactactaaagattacatgc |
54803694 |
T |
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| Q |
539 |
ttatactattgaagtgtgcgtttggattaatttataaaatttaaaaagggtgtggaa |
595 |
Q |
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| T |
54803693 |
ttatactattgaagtgtgcgtttggattaatttataaaatttaaaaagggtgtggaa |
54803637 |
T |
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