View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16948_high_8 (Length: 552)
Name: NF16948_high_8
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_8 |
 | |
|
| [»] scaffold0024 (5 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 6914587 - 6915116
Alignment:
| Q |
17 |
atcatcatttgcagaacaagccttaggagcatccatctgacaatgaatcattccatgactctgctctacttttgtttccatttcagcatcagcatttctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6914587 |
atcatcatttgcagaacaagccttaggagcatccatctgacaatgaatcattccatgactctgctctacttttgtttccatttcagcatcagcatttctt |
6914686 |
T |
|
| Q |
117 |
ttcacatcaccatcggaaactccattggaaagtttaggccttttcaatttcttgttttcacgagcatcgtcaacattgttgccgttagatatttccttta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
6914687 |
ttcacatcaccatcggaaactccattggaaagtttaggccttttcaatttcttgttttcacgagcattgtcaacattgttgccattagatatttccttta |
6914786 |
T |
|
| Q |
217 |
acttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgatagatccac |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6914787 |
acttttcccgcttcattttctttgttttctcatcttcaacctttaaccctatgttttcacataatgagttttccttctcaggttcccatgatagatccac |
6914886 |
T |
|
| Q |
317 |
tacaagctcctgtggtatataacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctgcatcatttgtttcaattgcat |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6914887 |
tacaagctcctgtagtatataacaaatatgaaaatcaaccacaaaaacaactatgaaaatcaacacatttttgcttctgcatcatttgtttcaattgcat |
6914986 |
T |
|
| Q |
417 |
cgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggagagaatctacacaccttttccaaatttgcttc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6914987 |
cgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggagagaatcaacacaccttttccaaatttgcttc |
6915086 |
T |
|
| Q |
517 |
ttttgaaggaaaaacaacaatattcttcga |
546 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
6915087 |
ttttgaaggcaaaacaacaatattgttcga |
6915116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 209 - 508
Target Start/End: Complemental strand, 153805 - 153504
Alignment:
| Q |
209 |
ttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgat |
308 |
Q |
| |
|
|||||||||||||| ||| |||||| |||| |||||| ||| |||||||||||| |||||||| ||| || ||| || | |||| ||||||||| ||| |
|
|
| T |
153805 |
ttcctttaactttttccgcttcattgtcttggttttcccattttcaacctttaaacctatgtttccacctactgaattctgcttcacaggttccccagat |
153706 |
T |
|
| Q |
309 |
agatccactacaagctcctgtggtatataacaaatatgaaaatcaaccat-aaaaacaactatgaaaatcaacacatttttgcttctg-catcatttgtt |
406 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||||||||||||| ||| |||||| || |||||||||||||||||||||||| || ||||||| ||| |
|
|
| T |
153705 |
agatccactacaagctcctatgttatataacagatatgaaaatcaagcataaaaaactacaatgaaaatcaacacatttttgcttatgccatcattagtt |
153606 |
T |
|
| Q |
407 |
tcaattgcatcgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggagag--aatctacacaccttttc |
504 |
Q |
| |
|
||| | |||| || ||| |||| ||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
153605 |
tcagtagcatacataaagtggaaccttattaaccatcaaacac--agttaacttatgtgtcaacgacagaaaaatggagagaaaatcaacacaccttttc |
153508 |
T |
|
| Q |
505 |
caaa |
508 |
Q |
| |
|
|||| |
|
|
| T |
153507 |
caaa |
153504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 208 - 395
Target Start/End: Complemental strand, 154113 - 153926
Alignment:
| Q |
208 |
tttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatga |
307 |
Q |
| |
|
||||||||||||||| | |||| | |||| |||||||||| |||||||||||| |||||||||||| || ||| || | |||| ||||||||| ||| |
|
|
| T |
154113 |
tttcctttaactttttcttcttcactgtcttggttttctcattttcaacctttaaacctatgttttcacctactgaattctgcttcccaggttcccctga |
154014 |
T |
|
| Q |
308 |
tagatccactacaagctcctgtggtatataacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctg |
395 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
154013 |
tagatccactactagctcctgaaatacataacaaatatgaaaatcaatcataaaatttactatgaaaatcaacacatttttgcttctg |
153926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 209 - 506
Target Start/End: Complemental strand, 153498 - 153200
Alignment:
| Q |
209 |
ttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgat |
308 |
Q |
| |
|
|||||||||||||| ||| |||| |||||| |||||||||| |||||||||||| || ||||| ||| || ||| || |||||| ||||||| || |
|
|
| T |
153498 |
ttcctttaactttttccgattcactttcttggttttctcattttcaacctttaaacctttgtttccacctagtgaattcagcttctcgggttccccaaat |
153399 |
T |
|
| Q |
309 |
agatccactacaagctcctgtggtatataacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacac-atttttgcttctg-catcatttgtt |
406 |
Q |
| |
|
||||| || || ||||||||| |||||||||| |||||||||||| | ||||||| |||||| |||||||||| | ||||||||||| ||||||| ||| |
|
|
| T |
153398 |
agatctaccactagctcctgtattatataacaagtatgaaaatcaatcttaaaaactactatggaaatcaacacaaattttgcttctgccatcattagtt |
153299 |
T |
|
| Q |
407 |
tcaattgcatcgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatg--gagagaatctacacaccttttc |
504 |
Q |
| |
|
||| |||||| || | ||||| ||||||||||||||||||| | ||| | |||||||||||| ||||||||| |||| |||| |||||||||||| |
|
|
| T |
153298 |
tcatttgcatacat-agaaggaaccttattaaccatcaaacac--agttaacacatgtgtcaactagagaaaaatgaagagaaaatcaacacaccttttc |
153202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 154883 - 154566
Alignment:
| Q |
20 |
atcatttgcagaacaagccttaggagcatccatctgacaatgaatcattccatgactctgctctacttttgtttccatttcagcatcagcatttcttttc |
119 |
Q |
| |
|
||||||||||| ||||| |||||| || | |||| || || |||||| |||||| ||| | ||| ||||||| ||||||||| ||| || ||| |||| |
|
|
| T |
154883 |
atcatttgcagcgcaagcattaggaccaccaatcttactataaatcataccatgattctcccctatttttgttcccatttcagaatctgcttttggtttc |
154784 |
T |
|
| Q |
120 |
acatcaccatcggaaactccattggaaagtttaggccttttcaatttcttgttttcacgagcatcgtcaacattgttgccgttagatatttcctttaact |
219 |
Q |
| |
|
|| |||| || |||||| |||| |||||||||||| ||||| |||||||||||| | |||||| |||||| ||||||| || |||||||||||||| | |
|
|
| T |
154783 |
actccaccctctgaaactacattagaaagtttaggctttttcgatttcttgttttggcaagcatcatcaacactgttgccattggatatttcctttaagt |
154684 |
T |
|
| Q |
220 |
tttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgatagatccactac |
319 |
Q |
| |
|
||||||| |||| |||||| ||||||||| | |||||||| | || | | ||| | | |||||||| ||| ||||||| ||||||||| ||| || |
|
|
| T |
154683 |
tttcccgcttcactttcttggttttctcacgtccaacctttgaagcattaactccacctgaggagttttctttcccaggttcacatgatagacccaagac |
154584 |
T |
|
| Q |
320 |
aagctcctgtggtatata |
337 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
154583 |
aacctcctgtagtatata |
154566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 154291 - 154142
Alignment:
| Q |
336 |
taacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctg-catcatttgtttcaattgcatcgatgaagaggaaactta |
434 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| ||| || ||||| ||||||||||||||||| ||||||| |||| |||| || |||||||| ||||||| |
|
|
| T |
154291 |
taacaaatatgaaaaccaagcataataactactttgcaaatcgacacatttttgcttctgtcatcattagtttgaattatatacatgaagagaaaactta |
154192 |
T |
|
| Q |
435 |
ttaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggaga |
486 |
Q |
| |
|
||||||||||| |||| | | |||||||||||||| |||||||||||||| |
|
|
| T |
154191 |
ttaaccatcaa--tcaaagtaaacttatgtgtcaactgcagaaaaatggaga |
154142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University