View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_high_9 (Length: 549)
Name: NF16948_high_9
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 36408627 - 36408093
Alignment:
| Q |
1 |
aggggaagttttgccgaggcttttaagaaacatgaagagaaatttagtgaaagcaaagagaaagtgcaaaagtggagagatgcattgagagaggttgcca |
100 |
Q |
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| T |
36408627 |
aggggaagttttgccgaggcttttaagaaacatgaagagaaatttagtgaaagcaaagagaaagtgcaaaagtggagagatgcattgagagaggttgcca |
36408528 |
T |
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| Q |
101 |
acttgtcggggtgggactccaaagaccagtaagtgaatggctttaattttcactgggttttaaacatcatgtattgatagagcctacttgtccaaaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36408527 |
acttgtcggggtgggactccaaagaccagtaagtgaatggctttaattttcactgggtttcaaacatcatgtattgatagagcctacttgtccaaaaact |
36408428 |
T |
|
| Q |
201 |
attgtaacctaagcaccgacacaaacactggacacgacattgacacggacatgttgaaaacggtgnnnnnnnnnnnnnnnntgaattaactgaatgtaat |
300 |
Q |
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| T |
36408427 |
attgtaacctaagcaccgacacaaacactagacacgacattgacacagacatgttgaaaacggtgaaaaataaaaaaaaaatgaattaactgaatgtaat |
36408328 |
T |
|
| Q |
301 |
cacatgtgct-gtgacatgttagtgtcgaacaatggacccgtcttcaattagaaatgtcggtgctacaaagattgtaactagcgtgtgtctgtccacttt |
399 |
Q |
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| T |
36408327 |
cacatgtgctggtgacatgttagtgtcgaacaatggacccgtcttcaattagaaatgtcggtgctacaaagattgtaactagcgtgtgtctgtccacttt |
36408228 |
T |
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| Q |
400 |
tctaagtcaatcatttataatttgtcaaaaataataatagaagttacaaagttctatgcccttatataggaagatacaattatttatattggagagaaag |
499 |
Q |
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| T |
36408227 |
tctaagtcaatcatttataatttgtcaaaaataataatagaagttacaaagttctatgcccttatataggaagatacaattatttatattggagagaaag |
36408128 |
T |
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| Q |
500 |
taacaaaattgtcaattaaatagtttaaatgaagt |
534 |
Q |
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| T |
36408127 |
taacaaaattgtcaattaaatagtctaaatgaagt |
36408093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 36399500 - 36399314
Alignment:
| Q |
1 |
aggggaagttttgccgaggcttttaagaaacatgaagagaaatttagtgaaagcaaagagaaagtgcaaaagtggagagatgcattgagagaggttgcca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
36399500 |
aggggaagttttgctgaggcttttaagaaacatgaagaaaaatttagtgaaagcaaagagaaggtgcaaaggtggagagatgcattgagagaggttgcca |
36399401 |
T |
|
| Q |
101 |
acttgtcggggtgggactccaaagaccagtaagtgaatggcttt-aattttcactgggttttaaacatcatgtattgatagagccta |
186 |
Q |
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| || || ||||||||||| || || ||||||||| ||| |||| |||||| |||| | |||||||||| |||||| ||| |||| |
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| T |
36399400 |
atttctcagggtgggactctaaggatcagtaagtgcatgcctttaaattttgcttgggctgtaaacatcatatattgacagaaccta |
36399314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 36393201 - 36393081
Alignment:
| Q |
28 |
aaacatgaagagaaatttagtgaaagcaaagagaaagtgcaaaagtggagagatgcattgagagaggttgccaacttgtcggggtgggactccaaagacc |
127 |
Q |
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||||||||||| ||||| | ||| || |||| ||| | ||||||||||| |||||||||||||||||||||||||||| || |||||||| || || | |
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| T |
36393201 |
aaacatgaagaaaaattcactgagagtaaagggaagatacaaaagtggaggtatgcattgagagaggttgccaacttgtcaggctgggactctaaggatc |
36393102 |
T |
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| Q |
128 |
agtaagtgaatggctttaatt |
148 |
Q |
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|||||||| ||| |||||||| |
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| T |
36393101 |
agtaagtgcatgcctttaatt |
36393081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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