View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16948_low_1 (Length: 877)
Name: NF16948_low_1
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_1 |
 | |
|
| [»] scaffold0341 (6 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 793; Significance: 0; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 15 - 861
Target Start/End: Original strand, 6521636 - 6522480
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6521636 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
6521735 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521736 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta |
6521835 |
T |
|
| Q |
215 |
ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
6521836 |
ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac |
6521935 |
T |
|
| Q |
315 |
agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521936 |
agtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat |
6522035 |
T |
|
| Q |
415 |
tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522036 |
tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata |
6522135 |
T |
|
| Q |
515 |
tgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgttt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522136 |
tgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgttt |
6522235 |
T |
|
| Q |
615 |
gcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcactatgtgtt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
6522236 |
gcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcac--tgtgtt |
6522333 |
T |
|
| Q |
715 |
aattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgatgattttattgtgttcattgttatcatctttttga |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6522334 |
aattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgttgattttattgtgttcattgttatcatctttttga |
6522433 |
T |
|
| Q |
815 |
tcaattaagaacaaggaaagccaaggaaataatttgaatgtactact |
861 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522434 |
tcaattaagaacaaggaaagccaaggaaataatttgaatgtactact |
6522480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 540
Target Start/End: Complemental strand, 6513000 - 6512475
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| |||| |||||||||||| ||||| |
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|
| T |
6513000 |
gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc |
6512901 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta |
214 |
Q |
| |
|
|||| |||||||| || ||||| ||||| | || || |||||||||||| |||||| ||||||||||||| ||||| || |||| | ||||| ||| |
|
|
| T |
6512900 |
aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagaccttttta |
6512801 |
T |
|
| Q |
215 |
ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac |
314 |
Q |
| |
|
||| | |||| | ||||| || |||||||| | ||| ||| | ||||| |||| ||||| ||||||||||| |||| ||||||| || |
|
|
| T |
6512800 |
tttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgat |
6512701 |
T |
|
| Q |
315 |
agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat |
414 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6512700 |
agtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcat |
6512601 |
T |
|
| Q |
415 |
tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata |
514 |
Q |
| |
|
| || |||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
6512600 |
tgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctagaattgttagaccaagttgttatttgagata |
6512501 |
T |
|
| Q |
515 |
tgaaaccaattcattcttctatcaac |
540 |
Q |
| |
|
||||||| ||||| |||||||||||| |
|
|
| T |
6512500 |
tgaaaccgattcactcttctatcaac |
6512475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 281 - 544
Target Start/End: Complemental strand, 6517133 - 6516870
Alignment:
| Q |
281 |
ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggt |
380 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6517133 |
ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt |
6517034 |
T |
|
| Q |
381 |
cttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtg |
480 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| | ||| |
|
|
| T |
6517033 |
ctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtg |
6516934 |
T |
|
| Q |
481 |
ctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
544 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
6516933 |
ctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
6516870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 299 - 540
Target Start/End: Complemental strand, 6506809 - 6506562
Alignment:
| Q |
299 |
agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct |
398 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
6506809 |
agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct |
6506710 |
T |
|
| Q |
399 |
gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta |
492 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||||| |||| || ||| |
|
|
| T |
6506709 |
gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta |
6506610 |
T |
|
| Q |
493 |
gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
540 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6506609 |
gacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
6506562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
6507099 |
gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc |
6507000 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
6506999 |
aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc |
6506903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| | |||| |||||||||| |||||| ||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
6517399 |
gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc |
6517300 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc |
194 |
Q |
| |
|
|||| ||||| |||||||||| |||||| | ||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6517299 |
aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc |
6517220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
| Q |
102 |
acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa |
201 |
Q |
| |
|
||||||| ||||| |||| ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| |||| |
|
|
| T |
47778041 |
acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa |
47778140 |
T |
|
| Q |
202 |
ttggacctgcttattttg |
219 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
47778141 |
ttggacctgcatattttg |
47778158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
| Q |
122 |
aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg |
219 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| ||||| || || ||| ||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
47788183 |
aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg |
47788280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |||| | | | ||| | | ||| ||||| |||||| |||||||| ||| ||| ||||| |
|
|
| T |
47760299 |
gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc |
47760200 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt |
187 |
Q |
| |
|
||||| ||||||||||||||| |||| |||| | ||||||||||| ||||||||||| |||||||| |
|
|
| T |
47760199 |
caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt |
47760133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
583 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
646 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
| Q |
446 |
agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
520 |
Q |
| |
|
||||||||||| |||||||| |||||| | |||||||||||||||||||| || ||||||||||| | |||||| |
|
|
| T |
47778382 |
agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac |
47778456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 520
Target Start/End: Original strand, 47788424 - 47788578
Alignment:
| Q |
366 |
caaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgta |
465 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| |||||| || ||||||||||||||| ||||||| || ||| |||||| ||||||| |
|
|
| T |
47788424 |
caaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgta |
47788523 |
T |
|
| Q |
466 |
acaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
520 |
Q |
| |
|
||||||| | |||||||||||| ||||||| || ||||||||||| | |||||| |
|
|
| T |
47788524 |
gcaataggattggtgctagaattattagaccaagctgtaatttgaggtttgaaac |
47788578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
| Q |
122 |
aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat |
215 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || |||||| |
|
|
| T |
47781969 |
aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat |
47782062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 47759954 - 47759914
Alignment:
| Q |
366 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
406 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47759954 |
caaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
| Q |
110 |
ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt |
187 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||| | |||||| ||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
6523733 |
ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt |
6523810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 136; Significance: 2e-70; HSPs: 6)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 299 - 540
Target Start/End: Complemental strand, 834 - 587
Alignment:
| Q |
299 |
agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct |
398 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
834 |
agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct |
735 |
T |
|
| Q |
399 |
gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta |
492 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||||| |||| || ||| |
|
|
| T |
734 |
gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta |
635 |
T |
|
| Q |
493 |
gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
540 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
634 |
gacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 299 - 540
Target Start/End: Complemental strand, 8487 - 8240
Alignment:
| Q |
299 |
agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct |
398 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
8487 |
agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct |
8388 |
T |
|
| Q |
399 |
gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta |
492 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||||| |||| || ||| |
|
|
| T |
8387 |
gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta |
8288 |
T |
|
| Q |
493 |
gacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
540 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
8287 |
gacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
8240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 1124 - 928
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
1124 |
gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc |
1025 |
T |
|
| Q |
115 |
aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
1024 |
aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc |
928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
| Q |
15 |
gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
8778 |
gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc |
8679 |
T |
|
| Q |
115 |
aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
8678 |
aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc |
8581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
583 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
646 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
583 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
646 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 722161 - 722305
Alignment:
| Q |
18 |
aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa |
117 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| |||||||||||||||| ||| |
|
|
| T |
722161 |
aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa |
722259 |
T |
|
| Q |
118 |
accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt |
163 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||| |||||||||| |
|
|
| T |
722260 |
accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt |
722305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
| Q |
16 |
acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca |
115 |
Q |
| |
|
|||||||| |||| || ||| |||| ||||||||||| || | |||||||| | | ||| || || ||||||| ||||||||||||||| |||||| |
|
|
| T |
28856632 |
acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc |
28856533 |
T |
|
| Q |
116 |
aaaccgaaaagaagcaattgg |
136 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
28856532 |
aaacaaaaaagaagcaattgg |
28856512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
| Q |
84 |
aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt |
134 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
28831368 |
aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt |
28831318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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