View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_10 (Length: 515)
Name: NF16948_low_10
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 496
Target Start/End: Original strand, 40128160 - 40128642
Alignment:
| Q |
15 |
tatcccatgcttgtttgctctatcaatctgtaaacacaaatgaactatgcaaattaatatttgatttaaatgaaaagtgctataataattaagtaaagct |
114 |
Q |
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| T |
40128160 |
tatcccatgcttgtttgctctatcaatctgttaacacaaatgaactatgcaaattaatatttgatttaaatgaaaagtgctataataattaagtaaagtt |
40128259 |
T |
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| Q |
115 |
aaattaaggctatatatttgcttctataaccttcaccaccgtgcagtttctgcatgaatcattgtctatgcaaaccctgcacatatgtatatgaaacnnn |
214 |
Q |
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| T |
40128260 |
aaattaaggctatatatttgcttctataaccttcaccaccgtgcagtttctgcatgaatcattgtctatgcaaaccctgcacatatgtatatgaaacaaa |
40128359 |
T |
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| Q |
215 |
nnnncac-gggatgatcaaattttttaatccatagcatgaactacggctgaactaacaatcaaatagtgtgtatcttttttggttaacaaagaagaagtt |
313 |
Q |
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||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40128360 |
aaaacactgggatgatcaaattttttaatccatagcatgaactccgtctgaactaacaatcaaatagtgcgtatcttttttggttaacaaagaagaagtt |
40128459 |
T |
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| Q |
314 |
gaacaaggaaagtaacatagtacattacctaggtggatggattctttctttgagtgactcaatttctctatcgatgtgaggctgctggtaaacaatctcc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40128460 |
gaacaaggaaagtaacatagtacattacctaggtggatggattctttcttttagtgactcaatttctctatcgatgtgaggctgctggtaaacaatctcc |
40128559 |
T |
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| Q |
414 |
atatcctctacgaaacaatggttcaacttgagctttgttggctgataagcatgcatgtacctacaaagattccatagccgcat |
496 |
Q |
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| T |
40128560 |
atatcctctacgaaacaatggttcaacttgagctttgttggctgataagcatgcatgtaccttcaaagattccatagccgcat |
40128642 |
T |
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