View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_11 (Length: 485)
Name: NF16948_low_11
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 28 - 469
Target Start/End: Original strand, 3829166 - 3829609
Alignment:
| Q |
28 |
agaatacgccatttatctatggtggcttgactactgacaaatccaaaaaatttactatatctaagctcaatatagtttatcataaatagttatacaaaaa |
127 |
Q |
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| T |
3829166 |
agaatacggcatttatctatggtggcttgactactgacaaatccaaaaaatttactatatctaagctcaatatagtttatcataaatagttttacaaaaa |
3829265 |
T |
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| Q |
128 |
catttaaattcataacaaataaaattatgaca---ttatgaaaatttggagttacaataagtatactatttgtaatccaaaaattgtaaaagttaatatc |
224 |
Q |
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| T |
3829266 |
catttaaattcataacaaataaaattatgacaccattatgaaaatttggagttacaataagtatactatt-gtaatccaaaaattgtaaaagttaatatc |
3829364 |
T |
|
| Q |
225 |
aaaggattataattgctcttgtaacgacttcatattttaaaagtgtcgtaagattttctcattttcaattcctactttttatttgttattgtgattgtgg |
324 |
Q |
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| T |
3829365 |
aaaggattataattgctcttgtaacgacttcatattttaaaagtgtcgtaagattttctcatttttaattcctactttttatttattattgtgattgtgg |
3829464 |
T |
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| Q |
325 |
atttacggtgtgtggttaggacggatccaggactaatgttttagtgtagctaaagtaatagtgtcagaaaaatttgcctaaatgaaattaatgactacat |
424 |
Q |
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| T |
3829465 |
atttacggtgtgtggttaggacggatccaggactaatgttttagtgtggctaaaataatagtgtcagaaaaatttgcctaaatgaaattaatgactacat |
3829564 |
T |
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| Q |
425 |
attatttcacccaattcaacagttttgatagttttatttgaccta |
469 |
Q |
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| T |
3829565 |
attatttcacccaattcaacagttttgatagttttatttgaccta |
3829609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 42436506 - 42436449
Alignment:
| Q |
103 |
tttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
160 |
Q |
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| T |
42436506 |
tttatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgacat |
42436449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 434
Target Start/End: Original strand, 8323139 - 8323230
Alignment:
| Q |
342 |
aggacggatccaggactaatgttttagtgtagctaaagtaatagtgtcagaaaaatttgcctaaatgaaattaatgactacatattatttcac |
434 |
Q |
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| T |
8323139 |
aggacagatccaaaactaatattttagtgtggctaaaataatagtgtcaaaaaaatttgcc-aaatgaaattaaaaactatgtattatttcac |
8323230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 10266464 - 10266520
Alignment:
| Q |
102 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
160 |
Q |
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| T |
10266464 |
gtttatcataaatatttata--aaaacatttaaatttataaccaataaaaatatgacat |
10266520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 10285489 - 10285545
Alignment:
| Q |
102 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
160 |
Q |
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| T |
10285489 |
gtttatcataaatatttata--aaaatatttaaattcataaccaataaaaatatgacat |
10285545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 6015844 - 6015786
Alignment:
| Q |
102 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
160 |
Q |
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| T |
6015844 |
gtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacat |
6015786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 12252576 - 12252518
Alignment:
| Q |
102 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
160 |
Q |
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| T |
12252576 |
gtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacat |
12252518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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