View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_14 (Length: 411)
Name: NF16948_low_14
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 32854437 - 32854820
Alignment:
| Q |
18 |
aagaaagtaatgacaataaattatagttgggtttgaatacacttttagtcggattaatgaaatttctttgcttataaaataaataaaactataagttagt |
117 |
Q |
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| T |
32854437 |
aagaaagtaatgacaataaattatagttgggtttgaatacacttttagtcatattaat-aaatttctttgcttataaaagaaataaaactataagttagt |
32854535 |
T |
|
| Q |
118 |
ttgatttttatacttggtcttggtggcgttggcatgacaccttaaaatgtgttctccaacttacattcgattaaccttaatgtcatcaattgggaaattt |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| |
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| T |
32854536 |
ttgattttaatacttggtcttggtggcgttggcatgacaccttaaaatgtgttctccaacttacatttgattattcttaatg---tcaattggggaattt |
32854632 |
T |
|
| Q |
218 |
ggatc--------------ctctcatgttgtccatcctgcctcgatctcaaccattcattaacttgttttctctctctactttattatactttccttcat |
303 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
32854633 |
ggatcctctcatgctatttctctcatgttgtccatcctgcctcgatctcaaccattcattaacttgttt--tctctctactttattgttctttccttcat |
32854730 |
T |
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| Q |
304 |
gtatgaaccaaccgttgatttgaaaaaagagaaagggttgaactaaaaggactagagaggatccacatttaaatttgggtgggttagttt |
393 |
Q |
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| T |
32854731 |
gtatgaaccaaccgttgatttgaaaaaagagaaagggttgaactaaaaggatcggagaggatccacatttaaatttgggtgagttagttt |
32854820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 335
Target Start/End: Complemental strand, 50324932 - 50324825
Alignment:
| Q |
229 |
tgttgtccatcctgcctcgatctcaaccattcattaacttgttttctctct-ctactttattatactttccttcatgtatgaaccaaccgttgatttgaa |
327 |
Q |
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| T |
50324932 |
tgttgtccatcctgccttaatctcagccattcattaactttttttctctctcctttgttgttattctttctttcatgtatcaatcaaccattgatttgga |
50324833 |
T |
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| Q |
328 |
aaaagaga |
335 |
Q |
| |
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||| |||| |
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| T |
50324832 |
aaaggaga |
50324825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 42889262 - 42889307
Alignment:
| Q |
242 |
gcctcgatctcaaccattcattaacttgttttctctctctacttta |
287 |
Q |
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|||| ||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
42889262 |
gccttgatcttaaccattcattaacttattttctctctcttcttta |
42889307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 40084173 - 40084071
Alignment:
| Q |
275 |
tctctctactttattatactt-tccttcatgtatgaaccaaccgttgatttgaaaaaagagaaagggttgaactaaaaggactagagaggatccacattt |
373 |
Q |
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||||||| ||||||||| ||| || ||||||||| || |||||||||| |||||||| |||| | |||||||| |||||| | ||||| |||||||||| |
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| T |
40084173 |
tctctcttctttattattcttgtcgttcatgtatcaatcaaccgttgaattgaaaaatgagatatggttgaaccaaaagggccggagagaatccacattt |
40084074 |
T |
|
| Q |
374 |
aaa |
376 |
Q |
| |
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||| |
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|
| T |
40084073 |
aaa |
40084071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 36565339 - 36565275
Alignment:
| Q |
214 |
atttggatcctctcatgttgtccatcctgcctcgatctcaaccattcattaacttgttttctctct |
279 |
Q |
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|||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |
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| T |
36565339 |
atttggatcctctcatgttgcacatcctgccataatcttaaccattcattaactt-ttttctctct |
36565275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 34819964 - 34819897
Alignment:
| Q |
214 |
atttggatcctctcatgttgtccatcctgcctcgatctcaaccattcattaacttgttttctctctctac |
283 |
Q |
| |
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|||| ||||||||| || ||||||||||| || |||||| |||||||||||||| |||||||||||||| |
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| T |
34819964 |
atttagatcctctcgtgctgtccatcctgtctt-atctcagccattcattaactt-ttttctctctctac |
34819897 |
T |
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