View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16948_low_15 (Length: 395)

Name: NF16948_low_15
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16948_low_15
NF16948_low_15
[»] chr6 (6 HSPs)
chr6 (29-180)||(33010452-33010603)
chr6 (242-380)||(33010663-33010795)
chr6 (242-380)||(32683521-32683654)
chr6 (242-380)||(32685231-32685364)
chr6 (107-148)||(4749414-4749455)
chr6 (94-150)||(27434752-27434808)
[»] scaffold0022 (1 HSPs)
scaffold0022 (27-158)||(101072-101204)
[»] chr4 (5 HSPs)
chr4 (27-158)||(24091-24223)
chr4 (27-133)||(13914737-13914844)
chr4 (111-158)||(14288161-14288208)
chr4 (116-158)||(13914751-13914793)
chr4 (94-150)||(18066749-18066805)
[»] scaffold0289 (1 HSPs)
scaffold0289 (27-158)||(22132-22264)
[»] chr8 (25 HSPs)
chr8 (27-158)||(10895839-10895971)
chr8 (27-158)||(287297-287429)
chr8 (26-70)||(15605885-15605929)
chr8 (26-70)||(15614238-15614282)
chr8 (28-69)||(15624450-15624491)
chr8 (26-69)||(15637226-15637269)
chr8 (27-69)||(15605704-15605746)
chr8 (26-64)||(15637048-15637086)
chr8 (28-69)||(15648238-15648279)
chr8 (110-158)||(12167193-12167241)
chr8 (110-158)||(12411621-12411669)
chr8 (29-69)||(15637777-15637817)
chr8 (107-151)||(16291972-16292016)
chr8 (54-158)||(25113411-25113517)
chr8 (26-69)||(15637409-15637452)
chr8 (107-158)||(17895037-17895088)
chr8 (27-69)||(15605385-15605427)
chr8 (27-69)||(15613738-15613780)
chr8 (31-69)||(15613911-15613949)
chr8 (51-132)||(40267360-40267442)
chr8 (28-69)||(15606069-15606110)
chr8 (28-69)||(15614422-15614463)
chr8 (28-69)||(15637593-15637634)
chr8 (37-69)||(15624095-15624127)
chr8 (37-69)||(15647883-15647915)
[»] scaffold0018 (1 HSPs)
scaffold0018 (74-158)||(67256-67340)
[»] chr3 (7 HSPs)
chr3 (51-151)||(6440879-6440980)
chr3 (27-158)||(9270763-9270891)
chr3 (107-158)||(6445181-6445232)
chr3 (27-69)||(2766128-2766170)
chr3 (94-158)||(20919306-20919370)
chr3 (94-158)||(20928268-20928332)
chr3 (94-158)||(37197867-37197931)
[»] chr1 (6 HSPs)
chr1 (28-151)||(3832141-3832266)
chr1 (27-158)||(3417283-3417414)
chr1 (27-133)||(8314021-8314128)
chr1 (27-148)||(11440796-11440916)
chr1 (107-158)||(8314035-8314086)
chr1 (27-158)||(46514343-46514475)
[»] chr2 (2 HSPs)
chr2 (94-158)||(45049537-45049601)
chr2 (110-158)||(5243273-5243321)
[»] scaffold1113 (1 HSPs)
scaffold1113 (316-380)||(1336-1402)
[»] scaffold0961 (1 HSPs)
scaffold0961 (316-380)||(2215-2281)
[»] chr7 (1 HSPs)
chr7 (27-69)||(7946588-7946630)
[»] chr5 (2 HSPs)
chr5 (97-158)||(19205915-19205976)
chr5 (110-151)||(29857750-29857791)
[»] scaffold0191 (1 HSPs)
scaffold0191 (58-144)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (94-150)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 33010452 - 33010603
Alignment:
Q  29 acacgtgacatcttcatattgctcatctcatttaatgtttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  33010452 acacgtgacatcttcatattgctcatctcatttaatgtttttcaccaaccaattaaaattgatgttgattcaattatattttattagttaatcaaaatag 33010551  T
Q  129 atcataactcatttatttttcatcagccaactgagctaagctcacgagtacg 180  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  33010552 atcatgacttatttatttttcatcagccaactgagctaagctcacgagtacg 33010603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 242 - 380
Target Start/End: Original strand, 33010663 - 33010795
Alignment:
Q  242 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactaacactcacaacttgaggataaaacggaacatagt 341  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||      |||||||||||||||||||||||||||||    
T  33010663 gtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatagt 33010756  T
Q  342 tcaatttccttttcttactccacacaactgcctaatttt 380  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  33010757 tcaatttccttttcttactccacacaactgcttaatttt 33010795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 380
Target Start/End: Complemental strand, 32683654 - 32683521
Alignment:
Q  242 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactaacactcacaacttgaggataaaacggaacatagt 341  Q
    |||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| |||||||||    
T  32683654 gtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatagt 32683560  T
Q  342 tcaatttccttttcttactccacacaactgcctaatttt 380  Q
    ||| ||| | |||||||||| ||||||||||||||||||    
T  32683559 tcagttttcctttcttactctacacaactgcctaatttt 32683521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 380
Target Start/End: Complemental strand, 32685364 - 32685231
Alignment:
Q  242 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactaacactcacaacttgaggataaaacggaacatagt 341  Q
    |||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| |||||||||    
T  32685364 gtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatagt 32685270  T
Q  342 tcaatttccttttcttactccacacaactgcctaatttt 380  Q
    ||| ||| | |||||||||  ||||||||||||||||||    
T  32685269 tcagttttcctttcttactatacacaactgcctaatttt 32685231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 4749414 - 4749455
Alignment:
Q  107 ttttattagccaatcaaaatagatcataactcatttattttt 148  Q
    |||| |||||||||||||| ||||||| ||||||||||||||    
T  4749414 ttttcttagccaatcaaaagagatcatgactcatttattttt 4749455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 27434752 - 27434808
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 150  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  27434752 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 27434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 101072 - 101204
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||| |||  || |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  101072 gtacacatggcatcttcaaatttttcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 101171  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    | |||||| ||||||||||||||||| ||||||    
T  101172 tggatcatgactcatttatttttcataagccaa 101204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 24223 - 24091
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||| ||| ||| |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  24223 gtacacatggcatcttcaaatttctcttctcatttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 24124  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    | ||| || ||||||||||||||||| ||||||    
T  24123 tggataatgactcatttatttttcattagccaa 24091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 13914844 - 13914737
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||| |||  || |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  13914844 gtacacatggcatcttcaaatttatcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 13914745  T
Q  126 tagatcat 133  Q
    | ||||||    
T  13914744 ttgatcat 13914737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 14288208 - 14288161
Alignment:
Q  111 attagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  14288208 attagccaatcaaaatgaatcatgactcatttatttttcattagccaa 14288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 13914793 - 13914751
Alignment:
Q  116 ccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||||||||||||||||| |||||||||||||| || ||||||    
T  13914793 ccaatcaaaatagatcatgactcatttattttttattagccaa 13914751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 18066805 - 18066749
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 150  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  18066805 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 18066749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 22264 - 22132
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| ||||||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||  ||||||| |||| ||||||| | |||||||||    
T  22264 gtacacatgacatcttctaatttctcatctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaa 22165  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    || ||||| ||||||||||||||||| ||||||    
T  22164 taaatcatgactcatttatttttcattagccaa 22132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 10895839 - 10895971
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||| ||| |||||||||||||||||||||  | |||| ||| || || |||  ||||||| |||| ||||||||| |||||||||    
T  10895839 gtacacatgccatcttcaaatttctcatctcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaa 10895938  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    | |||||| ||||||||||||||||| ||||||    
T  10895939 tggatcatgactcatttatttttcattagccaa 10895971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 287297 - 287429
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || ||| |||| ||| ||| |||||||||||  ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  287297 gtacacatggcattttcaaatttctcttctcatttaatactttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 287396  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    | |||||| |||||||||||||| || ||||||    
T  287397 tggatcatgactcatttattttttattagccaa 287429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15605929 - 15605885
Alignment:
Q  26 tgtacacgtgacatcttcatattgctcatctcatttaatgttttt 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15605929 tgtacacgtgacatcttcatatttctcatctcatttaatgttttt 15605885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15614282 - 15614238
Alignment:
Q  26 tgtacacgtgacatcttcatattgctcatctcatttaatgttttt 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15614282 tgtacacgtgacatcttcatatttctcatctcatttaatgttttt 15614238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 15624491 - 15624450
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  15624491 tacacgtgacatcttcatatttctcatctcatttaatgtttt 15624450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 15637269 - 15637226
Alignment:
Q  26 tgtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  15637269 tgtacacgtgtcatcttcatatttctcatctcatttaatgtttt 15637226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 15605746 - 15605704
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  15605746 gtacacgtgatatcttcatatttctcatctcatttaatgtttt 15605704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 15637086 - 15637048
Alignment:
Q  26 tgtacacgtgacatcttcatattgctcatctcatttaat 64  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  15637086 tgtacacgtgacatcttcatatttctcatctcatttaat 15637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 15648279 - 15648238
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  15648279 tacacctgacatcttcatatttctcatctcatttaatgtttt 15648238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 12167241 - 12167193
Alignment:
Q  110 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12167241 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12167193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 12411669 - 12411621
Alignment:
Q  110 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12411669 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12411621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 15637817 - 15637777
Alignment:
Q  29 acacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  15637817 acacgtgatatcttcatatttctcatctcatttaatgtttt 15637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 16291972 - 16292016
Alignment:
Q  107 ttttattagccaatcaaaatagatcataactcatttatttttcat 151  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||    
T  16291972 ttttattatccaatcaaaatggatcatgactcatttatttttcat 16292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 25113517 - 25113411
Alignment:
Q  54 tctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa--tagatcataactcatttatttttca 150  Q
    |||||||||||||||||  | || | ||||||||| |||  ||||||| |||||| || ||| ||||||||||  |||||||| ||||||||||||||||    
T  25113517 tctcatttaatgtttttttatcatccaattaaaatagattatgactcacttatatatt-ttaaccaatcaaaaaatagatcatgactcatttatttttca 25113419  T
Q  151 tcagccaa 158  Q
    | ||||||    
T  25113418 ttagccaa 25113411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 15637452 - 15637409
Alignment:
Q  26 tgtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||    
T  15637452 tgtacatgtgacatcttaatatttctcatctcatttaatgtttt 15637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 17895088 - 17895037
Alignment:
Q  107 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  17895088 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 17895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 15605427 - 15605385
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||    
T  15605427 gtacatgtgccatcttcatatttctcatctcatttaatgtttt 15605385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 15613780 - 15613738
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||    
T  15613780 gtacatgtgccatcttcatatttctcatctcatttaatgtttt 15613738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 15613949 - 15613911
Alignment:
Q  31 acgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  15613949 acgtgacatctacatatttctcatctcatttaatgtttt 15613911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 40267442 - 40267360
Alignment:
Q  51 tcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatca 132  Q
    ||||||||||||||| ||||| | |||| ||| ||||| ||| |||| ||| |||  |||||||||||||||||||| |||||    
T  40267442 tcatctcatttaatgcttttttatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaaatggatca 40267360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 15606110 - 15606069
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||| |||| ||||||||||| ||||||||||||||||||||    
T  15606110 tacatgtgatatcttcatatttctcatctcatttaatgtttt 15606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 15614463 - 15614422
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||| |||| ||||||||||| ||||||||||||||||||||    
T  15614463 tacatgtgatatcttcatatttctcatctcatttaatgtttt 15614422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 15637634 - 15637593
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    |||| |||||||||| ||||| ||||||||||||||||||||    
T  15637634 tacatgtgacatcttaatatttctcatctcatttaatgtttt 15637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15624127 - 15624095
Alignment:
Q  37 catcttcatattgctcatctcatttaatgtttt 69  Q
    |||||||||||| ||||||||||||||||||||    
T  15624127 catcttcatatttctcatctcatttaatgtttt 15624095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15647915 - 15647883
Alignment:
Q  37 catcttcatattgctcatctcatttaatgtttt 69  Q
    |||||||||||| ||||||||||||||||||||    
T  15647915 catcttcatatttctcatctcatttaatgtttt 15647883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 67340 - 67256
Alignment:
Q  74 caactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||| ||||||||| |||  ||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  67340 caaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaatggatcataactcatttatttttcattagccaa 67256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 6440980 - 6440879
Alignment:
Q  51 tcatctcatttaatgttttt-caccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttc 149  Q
    |||||||||||||||||||| || |||| ||| |||||  |   |||||||||||| ||||||| ||||||||||||  ||||| |||||||||||||||    
T  6440980 tcatctcatttaatgttttttcatcaaccaatcaaaatataccatgactcaattattttttatttgccaatcaaaatgaatcatgactcatttatttttc 6440881  T
Q  150 at 151  Q
    ||    
T  6440880 at 6440879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 9270891 - 9270763
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||  ||||||| ||    |||||| |||||| ||||    
T  9270891 gtacacatggcatcttctaatttctcatctcatttaatgctttttcatcaaccaatcaaaatatataatgactcattt----tttatttgccaattaaaa 9270796  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    || ||||| ||||||||||||||||| ||||||    
T  9270795 taaatcatgactcatttatttttcattagccaa 9270763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 6445232 - 6445181
Alignment:
Q  107 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  6445232 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 6445181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 2766170 - 2766128
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  2766170 gtacatgtgacatcttcatattcttcatctcatttaatgtttt 2766128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 20919306 - 20919370
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20919306 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20919370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 20928268 - 20928332
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20928268 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20928332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 37197867 - 37197931
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||||| |||| |||||||| |||||||||||   |||| || |||||| ||||||||||||||    
T  37197867 tgactcatttattttttattaaccaatcaaaatgattcatgacacatttagttttcatcagccaa 37197931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 3832141 - 3832266
Alignment:
Q  28 tacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaat 126  Q
    |||| |||||||||||||  |  ||||||||||||||||||||| | |||| ||| ||||| ||| |||| ||| |||  |||||||||||||||||| |    
T  3832141 tacatgtgacatcttcatgctcttcatctcatttaatgtttttctatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaatt 3832240  T
Q  127 agatc-ataactcatttatttttcat 151  Q
     |||| || |||||||||||||||||    
T  3832241 ggatcaatgactcatttatttttcat 3832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 3417283 - 3417414
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgt-ttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| ||||||||||||||| | ||||||||||||||  |||| | |||| ||| |||||   | ||||||||   || || |||||| |||||||||    
T  3417283 gtacacatgacatcttcatatttc-catctcatttaatgcatttttatcaaccaatcaaaatgtttattgactcatccattttctattagtcaatcaaaa 3417381  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    | |||||| ||||||||||||||||||||||||    
T  3417382 tggatcatgactcatttatttttcatcagccaa 3417414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8314128 - 8314021
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| ||||||||||| ||| ||  |||||||||||||||||  | |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  8314128 gtacacatgacatcttcaaatttcttttctcatttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 8314029  T
Q  126 tagatcat 133  Q
    | ||||||    
T  8314028 ttgatcat 8314021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 11440796 - 11440916
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgt-ttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| ||||||||||||||  ||||||| ||||||||  |||| |  ||| ||| ||||| ||| || ||||| |||| ||||||||| |||||||||    
T  11440796 gtacacatgacatcttcatat--ctcatctaatttaatgcatttttattaaccaatcaaaatggatcttaactcatttattttttattagtcaatcaaaa 11440893  T
Q  126 tagatcataactcatttattttt 148  Q
    | |||||| ||||||||||||||    
T  11440894 tggatcatgactcatttattttt 11440916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 8314086 - 8314035
Alignment:
Q  107 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||||| | |||||||||||||||||| |||||||||||||| || ||||||    
T  8314086 ttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaa 8314035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 46514343 - 46514475
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 125  Q
    |||||| || |||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||   |||||| |||  |||||||  ||||||||||    
T  46514343 gtacacatggcatcttctaatttctcatctcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaa 46514442  T
Q  126 tagatcataactcatttatttttcatcagccaa 158  Q
    |  || || | ||||||||||||||| ||||||    
T  46514443 tgaatgatgattcatttatttttcattagccaa 46514475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 45049537 - 45049601
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||||| |||  |||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  45049537 tgactcatttaatttttattagccaatcaaaatggatcatgactcatttatttttcattagccaa 45049601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 5243321 - 5243273
Alignment:
Q  110 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  5243321 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 5243273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 1336 - 1402
Alignment:
Q  316 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttt 380  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  |||||||||||||||||||    
T  1336 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttt 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 2281 - 2215
Alignment:
Q  316 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttt 380  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  |||||||||||||||||||    
T  2281 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttt 2215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 7946630 - 7946588
Alignment:
Q  27 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 69  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  7946630 gtacatgtgacatcttcatattcttcatctcatttaatgtttt 7946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 19205976 - 19205915
Alignment:
Q  97 ctcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 158  Q
    |||| |||| || |||||||||||| |||| |||||| |||||| |||||||||| ||||||    
T  19205976 ctcacttattttatattagccaatctaaatggatcatgactcatctatttttcatgagccaa 19205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 29857750 - 29857791
Alignment:
Q  110 tattagccaatcaaaatagatcataactcatttatttttcat 151  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  29857750 tattatccaatcaaaatggatcatgactcatttatttttcat 29857791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 17139 - 17054
Alignment:
Q  58 atttaatgttttt-caccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttat 144  Q
    ||||||||||||| || |||| ||| ||||| |||  ||||||| |||| |||||||| ||||| |||||||||||| ||| ||||||    
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaatagatcatgacttatttat 17054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 52611 - 52555
Alignment:
Q  94 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 150  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  52611 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 52555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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