View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16948_low_16 (Length: 393)
Name: NF16948_low_16
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 41573342 - 41572962
Alignment:
| Q |
13 |
acttactagaaaggttaggaatggtgtgaacactagtttttgggacgtagcttggaggggagatatttcgttccggggagaaatatcctagactcttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573342 |
acttactagaaaggttaggaatggtgtgaacactagtttttgggacgtagcttggagggtagatatttcgttccggggagaaatatcctagactcttctt |
41573243 |
T |
|
| Q |
113 |
gctttctaaccacaaagaggcgatggttggagaggtggggacgatcaacacaacggataccaattggacctttgtttggaggggcccctttttgtttggg |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573242 |
gctttctaaccaaaaagaggcgatggttggagaggtggggacgatcaacacaacggataccaattggacctttgtttggaggggcccctttttgtttggg |
41573143 |
T |
|
| Q |
213 |
agaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggtttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573142 |
agaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggtttt |
41573043 |
T |
|
| Q |
313 |
catggtgaaatctatgtataagaagttggaggtgttgatgctagcggaaaccacggtctcggttgccttttcttggaagtt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573042 |
catggtgaaatctatgtataagaagttggaggtgttgatgctagcggaaaccacggtctcggttgccttttcttggaagtt |
41572962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 27753098 - 27753459
Alignment:
| Q |
13 |
acttactagaaaggttaggaatggtgtgaacactagtttttgggacgtagcttggaggggagatatttcgttccggggagaaatatcctagactcttctt |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
27753098 |
acttactagagaggttaggaatggtgtgaacacgagtttttgggatgtagcttggaggggagagatttcgttctggg-agaaataccctagactcttctc |
27753196 |
T |
|
| Q |
113 |
gctttctaaccacaaagaggcgatggttggagaggtggggacgatcaacacaacggataccaattggacctttgtttggaggggcccc-tttttgtttgg |
211 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
27753197 |
gctttctacccaaaaagaggcgatggttggagacgtgggggcgatcaactcaatggataccaattggacctttctttggaggcgccccctttttgtttgg |
27753296 |
T |
|
| Q |
212 |
gagaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttt |
311 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| ||||||||| |||||||||| ||||| | |
|
|
| T |
27753297 |
gagaatgagttactgtcggaattattagaagatttggagagtttcagaggctctatagaagatggtatttggtggtggagattggagggtaacggggtgt |
27753396 |
T |
|
| Q |
312 |
tcatggtgaaatctatgtataagaagttggaggtgttgatgctagcggaaaccacggtctcggttg |
377 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
27753397 |
tctcagtgaaatctatgtataagaagttgga---gttgttgctagcggaaaccacggtctcggttg |
27753459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 362
Target Start/End: Complemental strand, 21942892 - 21942577
Alignment:
| Q |
47 |
agtttttgggacgtagcttggaggggagatatttcgttccggggagaaatatcctagactcttcttgctttctaaccacaaagaggcgatggttggagag |
146 |
Q |
| |
|
||||||||||| || ||||||||||| || ||| |||| || ||||||||||||||| |||| |||||| || || || ||||||| ||| ||||| |
|
|
| T |
21942892 |
agtttttgggaagtggcttggaggggggagttttttttccaggt-gaaatatcctagacttttctcgctttcaaatcaaaaggaggcgactgttagagag |
21942794 |
T |
|
| Q |
147 |
gtggggacgatcaacacaacggataccaattggacctttgtttggaggggccc-ctttttgtttgggagaatgagttactgacggaattattagaggatt |
245 |
Q |
| |
|
|||||| | |||||||||| || |||||||| ||||||||||||| | || ||||||||||||||||| ||| || || |||||||||||||| | |
|
|
| T |
21942793 |
gtggggctttttaacacaacgggtaacaattggaactttgtttggaggcgtccactttttgtttgggagaacgagctattggttgaattattagaggagt |
21942694 |
T |
|
| Q |
246 |
tggagagttttagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggt |
345 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||| |||| |||||||| |||||| ||||||||||| | ||| ||||| |||||||||||||||||||| |
|
|
| T |
21942693 |
tggatagttttagatcctctatagaagatgatttttggcggtggagattggaggaaaaaggggtttttacggttaaatcaatgtataagaagttggaggt |
21942594 |
T |
|
| Q |
346 |
gttgatgctagcggaaa |
362 |
Q |
| |
|
||||||| ||| ||||| |
|
|
| T |
21942593 |
gttgatgttagaggaaa |
21942577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 354
Target Start/End: Original strand, 26728183 - 26728449
Alignment:
| Q |
89 |
ggagaaatatcctagactcttcttgctttctaaccacaaagaggcgatggttggagaggtggggacgatcaacacaacggataccaattggacctttgtt |
188 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||| || |||||||||| ||||||||| ||||| | | || ||| ||| || ||||||||||||| | |
|
|
| T |
26728183 |
ggagaaatatccgagacttttctcgctttctaatcaaaaagaggcgaaggttggagatgtgggaatttttaatacatcggttagtaattggacctttgat |
26728282 |
T |
|
| Q |
189 |
tggaggggcccc-tttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaagatgatatttgttggt |
287 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || |||||||||||| | || ||||| | |||||||| ||| |||| || ||| ||| |||| |
|
|
| T |
26728283 |
tggaggcgccccctttttgtttgggagaatgagttgctaacggaattattacaagacttggatggctttagagggtctctagaggaggatgcttgatggt |
26728382 |
T |
|
| Q |
288 |
ggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgct |
354 |
Q |
| |
|
||||| |||| || || || | || | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26728383 |
ggagattggaagggaatggtggatttacggtgaaatctatgtacaagaagttggaggtgttgatgct |
26728449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 1965 - 2018
Alignment:
| Q |
197 |
cccctttttgtttgggagaatgagttactgacggaattattagaggatttggag |
250 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||| || | |||||||||| |
|
|
| T |
1965 |
cccctttttgtttgggagaatgatttgctaacggaattgttggcggatttggag |
2018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University