View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16948_low_17 (Length: 367)

Name: NF16948_low_17
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16948_low_17
NF16948_low_17
[»] chr7 (1 HSPs)
chr7 (1-346)||(781093-781432)
[»] scaffold0010 (2 HSPs)
scaffold0010 (1-249)||(125653-125897)
scaffold0010 (262-346)||(128643-128725)
[»] chr2 (3 HSPs)
chr2 (1-214)||(23999917-24000123)
chr2 (7-66)||(20854829-20854888)
chr2 (213-249)||(24000405-24000441)
[»] chr6 (2 HSPs)
chr6 (1-64)||(24068659-24068723)
chr6 (168-245)||(24068457-24068534)
[»] chr8 (1 HSPs)
chr8 (7-86)||(24117043-24117121)
[»] chr4 (1 HSPs)
chr4 (7-61)||(31815477-31815531)
[»] chr1 (1 HSPs)
chr1 (7-86)||(30509047-30509125)
[»] chr5 (1 HSPs)
chr5 (303-346)||(11203646-11203687)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 781093 - 781432
Alignment:
Q  1 cattctttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctattaacttggaattgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  781093 cattctttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctattaacttggaatcgagt 781192  T
Q  101 agtcttctatttcttcctacttcttctcgtataatagagttttctacctcactatttgaactacgtacctcgcccacttcatactcttattttacgctca 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||    
T  781193 agtcttctatttcatcctacttcttctcgtataatagagttttctacctcactatttgaac----tacctcgctcacttcatactcttattttacgctca 781288  T
Q  201 ttctctgtctcttattaacttgaaactaactcgctagttatcttattttacgctcatgttgttgttggcatcaagagaaaccataatgtattcatcattg 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  781289 ttctctttctcttattaacttgaaactaactcgctagttatcttattttacgctcatgttgttgttggcatcaagagaaaccataatgtattcatctctg 781388  T
Q  301 cttgttcataaggaagactatgatggtgtgacgaattgagctcctc 346  Q
    |||||||||| ||||||||||||||  |||| ||||||||||||||    
T  781389 cttgttcatatggaagactatgatg--gtgatgaattgagctcctc 781432  T

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Target: scaffold0010 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 125653 - 125897
Alignment:
Q  1 cattctttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctattaacttggaattgagt 100  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |    
T  125653 cattctttttcattcttctacttgattcgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttatattaaattggaactgatt 125752  T
Q  101 agtcttctatttcttcctacttcttctcgtataatagagttttctacctcactatttgaactacgtacctcgcccacttcatactcttattttacgctca 200  Q
    ||||||||||||| | | |||||||||| || |  ||| ||  ||||||| ||||||||||    ||||||||||||||||||||||||||||||||| |    
T  125753 agtcttctatttcattccacttcttctcataaagcagatttcactacctccctatttgaac----tacctcgcccacttcatactcttattttacgctaa 125848  T
Q  201 ttctctgtctcttattaacttgaaactaactcgctagttatcttatttt 249  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  125849 ttctctgcctcttattaacttgaaactaactcgtttgttatcttatttt 125897  T

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Target: scaffold0010; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 128643 - 128725
Alignment:
Q  262 ttgttggcatcaagagaaaccataatgtattcatcattgcttgttcataaggaagactatgatggtgtgacgaattgagctcctc 346  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||  |||| ||||||||||||||    
T  128643 ttgttggcatcaagagaaaccataatgtattcatctctgcatgttcataaggatgactatgatg--gtgatgaattgagctcctc 128725  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23999917 - 24000123
Alignment:
Q  1 cattctttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctattaacttggaattgagt 100  Q
    |||||||||||| |||||| |||||||   |||||  ||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||| |    
T  23999917 cattctttttcaatctcctgctagattcataataatatttttacttaattatgttgtgcttctattcatctttgtttcttctactaaattggaattgaat 24000016  T
Q  101 agtcttctatttcttcctacttcttctcgtataatagagttttctacctcactatttgaactacgtacctcgcccacttcatactcttattttacgctca 200  Q
       |||||||||| ||||||||||||||||| |  ||||||| |||| ||  |||||||||||     |||||||||||||||||  ||||||| |||||    
T  24000017 ---cttctatttcatcctacttcttctcgtaaatcagagtttgctacttccttatttgaactaa----ctcgcccacttcatacttctattttatgctca 24000109  T
Q  201 ttctctgtctctta 214  Q
    |||  |||||||||    
T  24000110 ttccttgtctctta 24000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 20854829 - 20854888
Alignment:
Q  7 ttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctact 66  Q
    ||||||||||| || ||||||||||||||||||  ||||| |||||||||| || |||||    
T  20854829 ttttcattctcttattagatttgaaataaccttcgtacttgattatcttgtactactact 20854888  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 24000405 - 24000441
Alignment:
Q  213 tattaacttgaaactaactcgctagttatcttatttt 249  Q
    |||||| |||||||||||||||| |||||||||||||    
T  24000405 tattaatttgaaactaactcgcttgttatcttatttt 24000441  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24068723 - 24068659
Alignment:
Q  1 cattctttttcattctcctactagatttgaaataacctttttacttaatta-tcttgtgcttcta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  24068723 cattctttttcattctcctactagatttgaaataacctttttacttaattattcttgttcttcta 24068659  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 24068534 - 24068457
Alignment:
Q  168 cctcgcccacttcatactcttattttacgctcattctctgtctcttattaacttgaaactaactcgctagttatctta 245  Q
    |||||||||| ||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||| | |||||||    
T  24068534 cctcgcccacctcatacttttattttatgttcattctctgtctctttttaacttgaaactaactcgcttgatatctta 24068457  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 24117121 - 24117043
Alignment:
Q  7 ttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctatta 86  Q
    ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| || | || ||| ||||||||||||    
T  24117121 ttttcattctcttacttgatttgaaataaccttcttacttgattatcttgtgcttttaattat-tttctttcttctatta 24117043  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 31815531 - 31815477
Alignment:
Q  7 ttttcattctcctactagatttgaaataacctttttacttaattatcttgtgctt 61  Q
    ||||||||||| || |||||||||||||||||| |||||| ||||| ||||||||    
T  31815531 ttttcattctcttattagatttgaaataaccttcttacttgattatattgtgctt 31815477  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 30509125 - 30509047
Alignment:
Q  7 ttttcattctcctactagatttgaaataacctttttacttaattatcttgtgcttctactcatctttgtttcttctatta 86  Q
    ||||||||||| ||||||||||||||||||||| ||| || |||| ||| ||||| || || | ||| ||||||||||||    
T  30509125 ttttcattctcttactagatttgaaataaccttcttatttgattaacttatgcttttaatcct-tttctttcttctatta 30509047  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 11203687 - 11203646
Alignment:
Q  303 tgttcataaggaagactatgatggtgtgacgaattgagctcctc 346  Q
    |||| ||||||||||||||||||  |||||||||||||||||||    
T  11203687 tgtttataaggaagactatgatg--gtgacgaattgagctcctc 11203646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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