View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_23 (Length: 283)
Name: NF16948_low_23
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 51196656 - 51196384
Alignment:
| Q |
1 |
atgccttaaaacctgagatcatattactaaattttaaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggat |
100 |
Q |
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| T |
51196656 |
atgccttaaaacctgagatcatattactaaattttgaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggat |
51196557 |
T |
|
| Q |
101 |
tttaagattcatagtgtttctctttgtatgttgttatggattaataaaaataattgcaagtgatgagaataaccataaccgttgatacaagagcataatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196556 |
tttaagattcatagtgtttctctttgtatgttgttatggattaataacaataattgcaagtgatgagaataaccataaccgttgatacaagagcataatt |
51196457 |
T |
|
| Q |
201 |
aaccaactattcaaaaagtcaataaattgatagtgtatttttctaaaaagtttgaacattctcctttcttcat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196456 |
aaccaactattcaaaaagtcaataaattgatagtgtatttttctaaaaagtttgaacattctcctttcttcat |
51196384 |
T |
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