View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_24 (Length: 282)
Name: NF16948_low_24
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 3322915 - 3322662
Alignment:
| Q |
11 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
110 |
Q |
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| T |
3322915 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
3322816 |
T |
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| Q |
111 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322815 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
3322716 |
T |
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| Q |
211 |
attggagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaac |
264 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322715 |
attagagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaac |
3322662 |
T |
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