View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16948_low_26 (Length: 248)
Name: NF16948_low_26
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 10405675 - 10405829
Alignment:
| Q |
69 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10405675 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
10405774 |
T |
|
| Q |
169 |
cataccgttttgaaagaattggcctaatttggctagccactgcatgatgtgggtg |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
10405775 |
cataccgttttgaaagaattggcctattttggctagccacttcatgatgtgggtg |
10405829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 10395064 - 10395172
Alignment:
| Q |
69 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
168 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| | | || |||||||||||||||||||||| |||||| |||||||||||||||||||||| || |
|
|
| T |
10395064 |
tatttgattgagtatattcatgacaatcaacgtccatatgaaatgcatttatgataataggcataacattgaccctgaataatgaaggagtgctacattt |
10395163 |
T |
|
| Q |
169 |
cataccgtt |
177 |
Q |
| |
|
||||||||| |
|
|
| T |
10395164 |
cataccgtt |
10395172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 26419662 - 26419737
Alignment:
| Q |
81 |
tatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaagg |
156 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26419662 |
tatatttatgacaatcaacgtttatttaatatgcatttatgataataggcatagaattgaccttgaataatgaagg |
26419737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University