View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_28 (Length: 236)
Name: NF16948_low_28
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5848966 - 5849196
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848966 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
5849065 |
T |
|
| Q |
101 |
cagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacacttaaattctcttgtcatttttaagcatataccggtgctatttcta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849066 |
cagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacacttaaattctcttgtcatttttaagcatataccggtgctatttcta |
5849165 |
T |
|
| Q |
201 |
agaacttgattatggatgcatttttcctttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
5849166 |
agaacttgattatggatgcatttttcctttg |
5849196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5455013 - 5454810
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
100 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| | | || |||||||| ||||| ||| ||||| ||||||||| ||| || |||||||| |
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| T |
5455013 |
atttacatacggatggcatcttcagaacttggtattttcttt-tcttattacatattttgtcttttcagttagatatata--gcataaacttatatattt |
5454917 |
T |
|
| Q |
101 |
cagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacact--taaattctcttgtcatttttaagcatataccggtgctatttc |
198 |
Q |
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|| ||||| |||| ||||||||||||| || || ||||||||||||| || ||||| ||||||||||| ||| |||| || |||| | |||||||| |
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| T |
5454916 |
caccatttgtcttgatattattaagcattgctgaaaacttgaaattacgtcacactagtaaattctcttttcacaagtaagtatgtacctgggctatttc |
5454817 |
T |
|
| Q |
199 |
taagaac |
205 |
Q |
| |
|
||||||| |
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|
| T |
5454816 |
taagaac |
5454810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 5490190 - 5490013
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
100 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| | || |||||||| ||||| ||| ||||| ||||||||| ||| || | | |||||| |
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| T |
5490190 |
atttacatacggatggcatcttcagaacttggtattttcatt-tcttattacatattttgtcttttcagttagatatata--gcataaattta-atattt |
5490095 |
T |
|
| Q |
101 |
cagcatttttcttcatattattaagcactg-ttgtaaacttgaaattaggtgacact--taaattctcttgtcatttttaag |
179 |
Q |
| |
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|| ||||| | || |||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| ||| ||||||| |
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|
| T |
5490094 |
caccatttgtgttgatattattaagcactgtttgaaaacttgaaattacgtgacactagtaaattctcttttcacttttaag |
5490013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 20343633 - 20343429
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtg-catatatt |
99 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| | |||||||||||||||| |||| |||| |||||||| |||||| | |||||||| |
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|
| T |
20343633 |
atttatatacggctagcatcttcagaacttggtattttcatt-tcctattacatctttttcctttccagttagatatatt--gcacaaatttcatatatt |
20343537 |
T |
|
| Q |
100 |
tcagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacact--taaattctcttgtcatttttaagcatataccggtgctattt |
197 |
Q |
| |
|
||||||||| |||| ||| ||||||| |||||| | | ||||||| | |||||||| ||||||||||| ||| ||| ||| || |||| | ||||| |
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|
| T |
20343536 |
tcagcatttatcttgatagtattaagtcctgttgaatagttgaaatcatgtgacactaataaattctcttttcactttaaagtatgtacctgaaatattt |
20343437 |
T |
|
| Q |
198 |
ctaagaac |
205 |
Q |
| |
|
|||||||| |
|
|
| T |
20343436 |
ctaagaac |
20343429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5802569 - 5802606
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtatttt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5802569 |
atttacatacgactcgcatcttcagaacttggtatttt |
5802606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5446454 - 5446279
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| | | |||||||| ||||| | | ||||| ||||||||| ||| || | | |||||| |
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|
| T |
5446454 |
atttacatacggctggcatcttcagaacttggtattttcatt-tgttattacatattttgtcctttcagttagatatata--gcataaatttacatattt |
5446358 |
T |
|
| Q |
101 |
cagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacac--ttaaattctcttgtcattttta |
177 |
Q |
| |
|
|| ||||| | || ||||||||||||| ||| ||||||||||||| ||||||| |||||||||||| ||| ||||| |
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|
| T |
5446357 |
caccatttgtgttgatattattaagcatccttgaaaacttgaaattacgtgacactattaaattctcttttcactttta |
5446279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5828237 - 5828274
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtatttt |
38 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
5828237 |
atttacatacgactcgcatcttccgaacttggtatttt |
5828274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25809358 - 25809533
Alignment:
| Q |
1 |
atttacatacgactcgcatcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatattt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| | | |||||||| ||||| | | ||||| ||||||||| ||| || | | |||||| |
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|
| T |
25809358 |
atttacatacggctggcatcttcagaacttggtattttcatt-tgttattacatattttgtcctttcagttagatatata--gcataaatttacatattt |
25809454 |
T |
|
| Q |
101 |
cagcatttttcttcatattattaagcactgttgtaaacttgaaattaggtgacac--ttaaattctcttgtcattttta |
177 |
Q |
| |
|
|| ||||| | || ||||||||||||| ||| ||||||||||||| ||||||| |||||||||||| ||| ||||| |
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|
| T |
25809455 |
caccatttgtgttgatattattaagcatccttgaaaacttgaaattacgtgacactattaaattctcttttcactttta |
25809533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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