View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_31 (Length: 202)
Name: NF16948_low_31
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 33178134 - 33178255
Alignment:
| Q |
72 |
gtagtcttctgtcccctttaatttgtaacattctttttcccnnnnnnnnctcatta---cagcgtactttgaatgtcatagtgattctgcttgtgaaaca |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33178134 |
gtagtcttctgtcccctttaatttgtaacattctttttctcttttttttctcattattacagcgtactttgaatgtcatagtgattctgcttgtgaaaca |
33178233 |
T |
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| Q |
169 |
acagttaagtgtgtgcctccta |
190 |
Q |
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|||||||||||||||| ||||| |
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| T |
33178234 |
acagttaagtgtgtgcttccta |
33178255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 33178035 - 33178082
Alignment:
| Q |
16 |
gtttgtttatgttatgatctactttttgtctctatttcttgttacaaa |
63 |
Q |
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| T |
33178035 |
gtttgtttatgttatgatctactttttgtctctatttcttgttacaaa |
33178082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 23339864 - 23339753
Alignment:
| Q |
76 |
tcttctgtcccctttaatttgtaacattctttttcccnnnnnnnnctcattacagcgtactttgaatgtcatagtgattctgcttgtgaaacaacagtta |
175 |
Q |
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| T |
23339864 |
tcttctatcccctttaatttgtaacattctttttcc---ttttttctcattacagcacacgttgaatgtcataatgattctgcttgtgaaaaaacagtta |
23339768 |
T |
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| Q |
176 |
agtgtgtgcctccta |
190 |
Q |
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||||| ||| ||||| |
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| T |
23339767 |
agtgtatgcttccta |
23339753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 23359672 - 23359784
Alignment:
| Q |
76 |
tcttctgtcccctttaatttgtaacattctttttcccnnnnnnnnctcattacagcgtactttgaatgtcatagtgattctgcttgtgaaacaacagtta |
175 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||| ||| || ||||| || |
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| T |
23359672 |
tcttctatcccctttaatttgtaacattctttttccc--tttttcctcattacagcgtactatgaatgttctaatgattctgcatgtcaagcaacaacta |
23359769 |
T |
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| Q |
176 |
agtgtgtgcctccta |
190 |
Q |
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||||||||| ||||| |
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| T |
23359770 |
agtgtgtgcttccta |
23359784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 23339966 - 23339919
Alignment:
| Q |
16 |
gtttgtttatgttatgatctactttttgtctctatttcttgttacaaa |
63 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
23339966 |
gtttgtttatgttatgatatactttttgtccctatttcttgttacaaa |
23339919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 23359570 - 23359617
Alignment:
| Q |
16 |
gtttgtttatgttatgatctactttttgtctctatttcttgttacaaa |
63 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
23359570 |
gtttgtttatgttatgatatactttttgtccctatttcttgttacaaa |
23359617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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